| batchCorrect | Batch correction methods |
| batchCorrect-method | Batch correction methods |
| batchelor-restrict | Using restriction |
| BatchelorParam-class | BatchelorParam methods |
| checkBatchConsistency | Check batch inputs |
| checkIfSCE | Check batch inputs |
| checkRestrictions | Check batch inputs |
| ClassicMnnParam | BatchelorParam methods |
| ClassicMnnParam-class | BatchelorParam methods |
| clusterMNN | Cluster-based MNN |
| correctExperiments | Correct SingleCellExperiment objects |
| cosineNorm | Cosine normalization |
| divideIntoBatches | Divide into batches |
| fastMNN | Fast mutual nearest neighbors correction |
| FastMnnParam | BatchelorParam methods |
| FastMnnParam-class | BatchelorParam methods |
| findMutualNN | Find mutual nearest neighbors |
| mnnCorrect | Mutual nearest neighbors correction |
| multiBatchNorm | Per-batch scaling normalization |
| multiBatchPCA | Multi-batch PCA |
| noCorrect | No correction |
| NoCorrectParam | BatchelorParam methods |
| NoCorrectParam-class | BatchelorParam methods |
| reducedMNN | MNN correction in reduced dimensions |
| regressBatches | Regress out batch effects |
| RegressParam | BatchelorParam methods |
| RegressParam-class | BatchelorParam methods |
| rescaleBatches | Scale counts across batches |
| RescaleParam | BatchelorParam methods |
| RescaleParam-class | BatchelorParam methods |