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| BadRegionFinder-package | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
| Bad Coverage | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
| BadRegionFinder | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
| Coverage Classifier | BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage |
| determine Coverage Quality | Classifies the determined coverage |
| determine Quantiles | Determines basewise user-defined quantiles |
| determine Regions Of Interest | Determines the regions of interest |
| determineCoverage | Determines the coverage (recommended for whole-genome analyses) |
| determineCoverageQuality | Classifies the determined coverage |
| determineQuantiles | Determines basewise user-defined quantiles |
| determineRegionsOfInterest | Determines the regions of interest |
| plot Detailed | Plots a more detailed overview of the coverage quality |
| plot Summary | Plots a summary of the coverage quality |
| plot Summary Genes | Plots a summary of the coverage quality concerning the genes only |
| plotDetailed | Plots a more detailed overview of the coverage quality |
| plotSummary | Plots a summary of the coverage quality |
| plotSummaryGenes | Plots a summary of the coverage quality concerning the genes only |
| report Bad Regions Detailed | Gives a detailed report on the coverage quality |
| report Bad Regions Genes | Sums up the coverage quality on a gene basis |
| report Bad Regions Summary | Sums up the coverage quality |
| reportBadRegionsDetailed | Gives a detailed report on the coverage quality |
| reportBadRegionsGenes | Sums up the coverage quality on a gene basis |
| reportBadRegionsSummary | Sums up the coverage quality |