BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

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Documentation for package ‘BaalChIP’ version 1.6.0

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adjustmentBaalPlot Method adjustmentBaalPlot
adjustmentBaalPlot-method Method adjustmentBaalPlot
alleleCounts Method alleleCounts
alleleCounts-method Method alleleCounts
BaalChIP BaalChIP-class
BaalChIP.get Method BaalChIP.get
BaalChIP.get-method Method BaalChIP.get
BaalChIP.report Method BaalChIP.report
BaalChIP.report-method Method BaalChIP.report
BaalChIP.run Method BaalChIP.run
BaalChIP.run-method Method BaalChIP.run
BaalObject BaalObject example dataset
blacklist_hg19 Blacklisted genomic regions
ENCODEexample ENCODEexample example dataset
FAIREexample FAIREexample example dataset
filter1allele Method filter1allele
filter1allele-method Method filter1allele
filterIntbias Method filterIntbias
filterIntbias-method Method filterIntbias
getASB Method getASB
getASB-method Method getASB
mergePerGroup Method mergePerGroup
mergePerGroup-method Method mergePerGroup
pickrell2011cov1_hg19 Genomic regions of collapsed repeats
plotQC Method plotQC
plotQC-method Method plotQC
plotSimul Method plotSimul
plotSimul-method Method plotSimul
QCfilter Method QCfilter
QCfilter-method Method QCfilter
summaryASB Method summaryASB
summaryASB-method Method summaryASB
summaryQC Method summaryQC
summaryQC-method Method summaryQC
UniqueMappability50bp_hg19 Genomic regions of unique mappability