| ASpli-package | Analysis of alternative splicing using RNAseq |
| altPSI | Accessors for ASpliAS object |
| altPSI-method | Class '"ASpliAS"' |
| AsDiscover | Report PSI and PIR using experimental junctions |
| AsDiscover-method | Class '"ASpliCounts"' |
| ASpli | Analysis of alternative splicing using RNAseq |
| ASpliAS-class | Class '"ASpliAS"' |
| ASpliCounts | Class '"ASpliCounts"' |
| ASpliCounts-class | Class '"ASpliCounts"' |
| ASpliDU-class | Class '"ASpliDU"' |
| ASpliFeatures-class | Class '"ASpliFeatures"' |
| binGenome | Feature coordinates extraction |
| binGenome-method | Feature coordinates extraction |
| binGenome-methods | Feature coordinates extraction |
| binsDU | Accessors for ASpliDU object |
| binsDU-method | Class '"ASpliDU"' |
| countsb | Accessors for ASpliCounts object |
| countsb-method | Class '"ASpliCounts"' |
| countse1i | Accessors for ASpliCounts object |
| countse1i-method | Class '"ASpliCounts"' |
| countsg | Accessors for ASpliCounts object |
| countsg-method | Class '"ASpliCounts"' |
| countsie2 | Accessors for ASpliCounts object |
| countsie2-method | Class '"ASpliCounts"' |
| countsj | Accessors for ASpliCounts object |
| countsj-method | Class '"ASpliCounts"' |
| DUreport | Differential gene expression and differential bin/junction usage estimation |
| DUreport-method | Class '"ASpliCounts"' |
| DUreport_DEXSeq | Differential gene expression and differential bin/junction usage estimation |
| DUreport_DEXSeq-method | Class '"ASpliCounts"' |
| esPSI | Accessors for ASpliAS object |
| esPSI-method | Class '"ASpliAS"' |
| featuresb | Accessors for ASpliFeatures object |
| featuresb-method | Class '"ASpliFeatures"' |
| featuresg | Accessors for ASpliFeatures object |
| featuresg-method | Class '"ASpliFeatures"' |
| featuresj | Accessors for ASpliFeatures object |
| featuresj-method | Class '"ASpliFeatures"' |
| genesDE | Accessors for ASpliDU object |
| genesDE-method | Class '"ASpliDU"' |
| irPIR | Accessors for ASpliAS object |
| irPIR-method | Class '"ASpliAS"' |
| joint | Accessors for ASpliAS object |
| joint-method | Class '"ASpliAS"' |
| junctionsDU | Accessors for ASpliDU object |
| junctionsDU-method | Class '"ASpliDU"' |
| junctionsPIR | Accessors for ASpliAS object |
| junctionsPIR-method | Class '"ASpliAS"' |
| junctionsPSI | Accessors for ASpliAS object |
| junctionsPSI-method | Class '"ASpliAS"' |
| loadBAM | Load BAM files |
| plotTopTags | Coverage plots |
| rds | Divides read counts by gene and bin length |
| rds-method | Class '"ASpliCounts"' |
| rdsb | Accessors for ASpliCounts object |
| rdsb-method | Class '"ASpliCounts"' |
| rdsg | Accessors for ASpliCounts object |
| rdsg-method | Class '"ASpliCounts"' |
| readCounts | Summarize read overlaps |
| readCounts-method | Class '"ASpliFeatures"' |
| show-method | Display a summary of data contained in ASpliObjects |
| show-methods | Display a summary of data contained in ASpliObjects |
| writeAll | Write results |
| writeAll-method | Write results |
| writeAS | Write results |
| writeAS-method | Class '"ASpliAS"' |
| writeAS-methods | Write results |
| writeCounts | Write results |
| writeCounts-method | Class '"ASpliCounts"' |
| writeCounts-methods | Write results |
| writeDU | Write results |
| writeDU-method | Class '"ASpliDU"' |
| writeDU-methods | Write results |
| writeRds | Write results |
| writeRds-method | Class '"ASpliCounts"' |
| writeRds-methods | Write results |