Adaptive Robust Regression normalization for Illumina methylation data

Documentation for package ‘ARRmNormalization’ version 1.20.0

ARRmNormalization-package	ARRm normalization for Illumina methylation data
ARRmNormalization	ARRm normalization for Illumina methylation data
getBackground	Estimate background intensity from the negative control probes
getCoefficients	Return the coefficients from the ARRm linear model
getDesignInfo	Build the chip and position indices
getQuantiles	Return the percentiles of a betaMatrix for each probe type
normalizeARRm	Perform ARRm normalization
positionPlots	Plots to evalue chip position effects on different percentiles
ProbesType	Probe Design information for the 450k methylation assay
quantilePlots	Diagnostic plots for evaluation of background effects and dye bias effects on different percentiles