| annmap-package | Provide access to the Annmap annotation database |
| allArrays | annmap 'all' functions |
| allChromosomes | annmap 'all' functions |
| allDomains | annmap 'all' functions |
| allEstExons | annmap 'all' functions |
| allEstGenes | annmap 'all' functions |
| allEstTranscripts | annmap 'all' functions |
| allExons | annmap 'all' functions |
| allGenes | annmap 'all' functions |
| allPredictionTranscripts | annmap 'all' functions |
| allProbes | annmap 'all' functions |
| allProbesets | annmap 'all' functions |
| allProteins | annmap 'all' functions |
| allSymbols | annmap 'all' functions |
| allSynonyms | annmap 'all' functions |
| allTranscripts | annmap 'all' functions |
| annmap | Provide access to the Annmap annotation database |
| annmapAddConnection | annmap 'utils' functions |
| annmapAll | annmap 'all' functions |
| annmapClearCache | annmap 'utils' functions |
| annmapConnect | annmap 'utils' functions |
| annmapDetails | annmap 'details' functions |
| annmapDisconnect | annmap 'utils' functions |
| annmapEnv | annmap 'env' functions |
| annmapFilters | annmap 'filter' functions |
| annmapGenePlot | annmap 'utils' functions |
| annmapGetParam | annmap 'env' functions |
| annmapRange | annmap 'range' functions |
| annmapRangeApply | annmap 'utils' functions |
| annmapSeqname | Seqnames manipulation functions |
| annmapSetParam | annmap 'env' functions |
| annmapTo | annmap 'to' functions |
| annmapToggleCaching | annmap 'utils' functions |
| annmapUtils | annmap 'utils' functions |
| arrayDetails | annmap 'details' functions |
| arrayToProbeset | annmap 'to' functions |
| arrayType | annmap 'utils' functions |
| chromosomeDetails | annmap 'details' functions |
| codingProbesets | annmap coding functions |
| convertBamToRle | Plotting BAM file data alongside the features of a chromosome |
| domainDetails | annmap 'details' functions |
| domainInRange | annmap 'range' functions |
| domainInRange-method | annmap 'range' functions |
| domainToGene | annmap 'to' functions |
| domainToProbeset | annmap 'to' functions |
| domainToProtein | annmap 'to' functions |
| domainToTranscript | annmap 'to' functions |
| estExonDetails | annmap 'details' functions |
| estExonInRange | annmap 'range' functions |
| estExonInRange-method | annmap 'range' functions |
| estExonToEstGene | annmap 'to' functions |
| estExonToEstTranscript | annmap 'to' functions |
| estExonToProbeset | annmap 'to' functions |
| estGeneDetails | annmap 'details' functions |
| estGeneInRange | annmap 'range' functions |
| estGeneInRange-method | annmap 'range' functions |
| estGeneToEstExon | annmap 'to' functions |
| estGeneToEstTranscript | annmap 'to' functions |
| estGeneToProbeset | annmap 'to' functions |
| estTranscriptDetails | annmap 'details' functions |
| estTranscriptInRange | annmap 'range' functions |
| estTranscriptInRange-method | annmap 'range' functions |
| estTranscriptToEstExon | annmap 'to' functions |
| estTranscriptToEstGene | annmap 'to' functions |
| estTranscriptToProbeset | annmap 'to' functions |
| exonDetails | annmap 'details' functions |
| exonic | annmap 'filter' functions |
| exonInRange | annmap 'range' functions |
| exonInRange-method | annmap 'range' functions |
| exonToGene | annmap 'to' functions |
| exonToProbeset | annmap 'to' functions |
| exonToTranscript | annmap 'to' functions |
| geneDetails | annmap 'details' functions |
| geneInRange | annmap 'range' functions |
| geneInRange-method | annmap 'range' functions |
| generalisedNameToEnsembl | Seqnames manipulation functions |
| generalisedNameToNCBI | Seqnames manipulation functions |
| generateBridgeData | Plotting BAM file data alongside the features of a chromosome |
| geneToDomain | annmap 'to' functions |
| geneToExon | annmap 'to' functions |
| geneToExonProbeset | annmap 'to' functions |
| geneToExonProbesetExpr | annmap 'to' functions |
| geneToGeneRegionTrack | annmap 'utils' functions |
| geneToProbeset | annmap 'to' functions |
| geneToProtein | annmap 'to' functions |
| geneToSymbol | annmap 'to' functions |
| geneToSynonym | annmap 'to' functions |
| geneToTranscript | annmap 'to' functions |
| genomeToProteinCoords | annmap co-ordinate mapping functions |
| genomeToTranscriptCoords | annmap co-ordinate mapping functions |
| genomicExonDepthPlot | Plotting a section of a chromosome. |
| genomicPlot | Plotting a section of a chromosome. |
| genomicProbePlot | Plotting a section of a chromosome. |
| hasProbes | annmap 'filter' functions |
| hasProbesAtleast | annmap 'filter' functions |
| hasProbesBetween | annmap 'filter' functions |
| hasProbesIn | annmap 'filter' functions |
| intergenic | annmap 'filter' functions |
| intronic | annmap 'filter' functions |
| isExonic | annmap 'filter' functions |
| isIntergenic | annmap 'filter' functions |
| isIntronic | annmap 'filter' functions |
| isUnreliable | annmap 'filter' functions |
| ngsBridgePlot | Plotting BAM file data alongside the features of a chromosome |
| ngsTraceLabel | Plotting BAM file data alongside the features of a chromosome |
| ngsTracePlotter | Plotting BAM file data alongside the features of a chromosome |
| ngsTraceScale | Plotting BAM file data alongside the features of a chromosome |
| nonIntronicGeneLength | annmap coding functions |
| nonIntronicTranscriptLength | annmap coding functions |
| predictionTranscriptDetails | annmap 'details' functions |
| predictionTranscriptInRange | annmap 'range' functions |
| predictionTranscriptInRange-method | annmap 'range' functions |
| predictionTranscriptToPredictionExon | annmap 'to' functions |
| predictionTranscriptToProbeset | annmap 'to' functions |
| probeDetails | annmap 'details' functions |
| probeInRange | annmap 'range' functions |
| probeInRange-method | annmap 'range' functions |
| probesetDetails | annmap 'details' functions |
| probesetInRange | annmap 'range' functions |
| probesetInRange-method | annmap 'range' functions |
| probesetToCdnatranscript | annmap 'to' functions |
| probesetToDomain | annmap 'to' functions |
| probesetToEstExon | annmap 'to' functions |
| probesetToEstGene | annmap 'to' functions |
| probesetToEstTranscript | annmap 'to' functions |
| probesetToExon | annmap 'to' functions |
| probesetToGene | annmap 'to' functions |
| probesetToHit | annmap 'to' functions |
| probesetToPredictionTranscript | annmap 'to' functions |
| probesetToProbe | annmap 'to' functions |
| probesetToProtein | annmap 'to' functions |
| probesetToTranscript | annmap 'to' functions |
| probeToHit | annmap 'to' functions |
| probeToProbeset | annmap 'to' functions |
| proteinCoordsToGenome | annmap co-ordinate mapping functions |
| proteinDetails | annmap 'details' functions |
| proteinInRange | annmap 'range' functions |
| proteinInRange-method | annmap 'range' functions |
| proteinToDomain | annmap 'to' functions |
| proteinToGene | annmap 'to' functions |
| proteinToProbeset | annmap 'to' functions |
| proteinToTranscript | annmap 'to' functions |
| seqnameMapping | Seqnames manipulation functions |
| seqnamesToEnsembl | Seqnames manipulation functions |
| seqnamesToNCBI | Seqnames manipulation functions |
| spliceGroupIndex | Splice indexing |
| spliceIndex | Splice indexing |
| strandAsInteger | annmap 'utils' functions |
| symbolToEstGene | annmap 'to' functions |
| symbolToEstTranscript | annmap 'to' functions |
| symbolToGene | annmap 'to' functions |
| symbolToTranscript | annmap 'to' functions |
| synonymDetails | annmap 'details' functions |
| synonymToEstGene | annmap 'to' functions |
| synonymToEstTranscript | annmap 'to' functions |
| synonymToGene | annmap 'to' functions |
| synonymToTranscript | annmap 'to' functions |
| transcriptCoordsToGenome | annmap co-ordinate mapping functions |
| transcriptDetails | annmap 'details' functions |
| transcriptInRange | annmap 'range' functions |
| transcriptInRange-method | annmap 'range' functions |
| transcriptToCdnaprobeset | annmap 'to' functions |
| transcriptToCodingExon | annmap coding functions |
| transcriptToCodingRange | annmap coding functions |
| transcriptToDomain | annmap 'to' functions |
| transcriptToExon | annmap 'to' functions |
| transcriptToExonProbeset | annmap 'to' functions |
| transcriptToGene | annmap 'to' functions |
| transcriptToProbeset | annmap 'to' functions |
| transcriptToProtein | annmap 'to' functions |
| transcriptToSynonym | annmap 'to' functions |
| transcriptToTranslatedprobes | annmap 'to' functions |
| transcriptToUtrExon | annmap coding functions |
| transcriptToUtrRange | annmap coding functions |
| unreliable | annmap 'filter' functions |
| utrProbesets | annmap coding functions |