| aaf.handler |
Handle feching annotation data columns |
| aafChromLoc |
Constructor for aafChromLoc objects |
| aafChromLoc-class |
Class aafChromLoc, a class for gene chromosome locations |
| aafChromosome |
Constructor for aafChromosome objects |
| aafChromosome-class |
Class aafChromosome, a class for gene chromosome assignments |
| aafCytoband |
Constructor for aafCytoband objects |
| aafCytoband-class |
Class aafCytoband, a class for cytoband data |
| aafDescription |
Constructor for aafDescription objects |
| aafDescription-class |
Class aafDescription, a class for gene descriptions |
| aafExpr |
Sample ExpressionSet used for demonstration purposes |
| aafGenBank |
Constructor for aafGenBank objects |
| aafGenBank-class |
Class aafGenBank, a class for GenBank accession numbers |
| aafGO |
Constructor for aafGO objects |
| aafGO-class |
Class aafGO, a class for gene ontology ids |
| aafGOItem |
Class aafGOItem, a class for gene ontology id elements |
| aafGOItem-class |
Class aafGOItem, a class for gene ontology id elements |
| aafIntensity |
Class aafIntensity, a class for gene expression values |
| aafIntensity-class |
Class aafIntensity, a class for gene expression values |
| aafList |
Class aafList, a specialized subclass of list |
| aafList-class |
Class aafList, a specialized subclass of list |
| aafLocusLink |
Constructor for aafLocusLink objects |
| aafLocusLink-class |
Class aafLocusLink, a class for LocusLink ids |
| aafPathway |
Constructor for aafPathway objects |
| aafPathway-class |
Class aafPathway, a class for KEGG pathway ids |
| aafPathwayItem |
Class aafPathwayItem, a class for KEGG pathway id elements |
| aafPathwayItem-class |
Class aafPathwayItem, a class for KEGG pathway id elements |
| aafProbe |
Constructor for aafProbe objects |
| aafProbe-class |
Class aafProbe, a class for Probe ids |
| aafPubMed |
Constructor for aafPubMed objects |
| aafPubMed-class |
Class aafPubMed, a class for PubMed ids |
| aafSearchGO |
Find probe ids corresponding to GO ids |
| aafSearchText |
Search metadata annotation text |
| aafSigned |
Class aafSigned, a class for signed numerical data |
| aafSigned-class |
Class aafSigned, a class for signed numerical data |
| aafSymbol |
Constructor for aafSymbol objects |
| aafSymbol-class |
Class aafSymbol, a class for gene symbols |
| aafTable |
Constructor for aafTable objects |
| aafTable-class |
Class aafTable, a tabular microarray data class |
| aafTableAnn |
Constructor for aafTable objects from annotation data |
| aafTableFrame |
Constructor for aafTable objects from data frames |
| aafTableInt |
Constructor for aafTable objects from ExpressionSets |
| aafUniGene |
Constructor for aafUniGene objects |
| aafUniGene-class |
Class aafUniGene, a class for UniGene cluster ids |
| getCSS |
Methods for function getCSS |
| getCSS-method |
Class aafGO, a class for gene ontology ids |
| getCSS-method |
Class aafList, a specialized subclass of list |
| getCSS-method |
Class aafPathway, a class for KEGG pathway ids |
| getCSS-method |
Class aafPubMed, a class for PubMed ids |
| getCSS-method |
Class aafSigned, a class for signed numerical data |
| getCSS-method |
Methods for function getCSS |
| getCSS-methods |
Methods for function getCSS |
| getHTML |
Methods for function getHTML |
| getHTML-method |
Class aafGO, a class for gene ontology ids |
| getHTML-method |
Class aafGOItem, a class for gene ontology id elements |
| getHTML-method |
Class aafList, a specialized subclass of list |
| getHTML-method |
Class aafPathway, a class for KEGG pathway ids |
| getHTML-method |
Class aafPathwayItem, a class for KEGG pathway id elements |
| getHTML-method |
Class aafPubMed, a class for PubMed ids |
| getHTML-method |
Class aafUniGene, a class for UniGene cluster ids |
| getHTML-method |
Methods for function getHTML |
| getHTML-methods |
Methods for function getHTML |
| getTD |
Methods for function getTD |
| getTD-method |
Class aafGO, a class for gene ontology ids |
| getTD-method |
Class aafIntensity, a class for gene expression values |
| getTD-method |
Class aafList, a specialized subclass of list |
| getTD-method |
Class aafPathway, a class for KEGG pathway ids |
| getTD-method |
Class aafPubMed, a class for PubMed ids |
| getTD-method |
Class aafSigned, a class for signed numerical data |
| getTD-method |
Methods for function getTD |
| getTD-methods |
Methods for function getTD |
| getText |
Methods for function getText |
| getText-method |
Class aafCytoband, a class for cytoband data |
| getText-method |
Class aafGO, a class for gene ontology ids |
| getText-method |
Class aafGOItem, a class for gene ontology id elements |
| getText-method |
Class aafList, a specialized subclass of list |
| getText-method |
Class aafPathway, a class for KEGG pathway ids |
| getText-method |
Class aafPathwayItem, a class for KEGG pathway id elements |
| getText-method |
Methods for function getText |
| getText-methods |
Methods for function getText |
| getURL |
Methods for function getURL |
| getURL-method |
Class aafCytoband, a class for cytoband data |
| getURL-method |
Class aafGO, a class for gene ontology ids |
| getURL-method |
Class aafGOItem, a class for gene ontology id elements |
| getURL-method |
Class aafGenBank, a class for GenBank accession numbers |
| getURL-method |
Class aafList, a specialized subclass of list |
| getURL-method |
Class aafLocusLink, a class for LocusLink ids |
| getURL-method |
Class aafPathway, a class for KEGG pathway ids |
| getURL-method |
Class aafPathwayItem, a class for KEGG pathway id elements |
| getURL-method |
Class aafProbe, a class for Probe ids |
| getURL-method |
Class aafPubMed, a class for PubMed ids |
| getURL-method |
Class aafUniGene, a class for UniGene cluster ids |
| getURL-method |
Methods for function getURL |
| getURL-methods |
Methods for function getURL |
| saveHTML |
Class aafTable, a tabular microarray data class |
| saveHTML-method |
Class aafTable, a tabular microarray data class |
| saveText |
Class aafTable, a tabular microarray data class |
| saveText-method |
Class aafTable, a tabular microarray data class |
| selectorWidget |
Dialog to select items from a list |
| show-method |
Class aafCytoband, a class for cytoband data |
| show-method |
Class aafGOItem, a class for gene ontology id elements |
| show-method |
Class aafList, a specialized subclass of list |
| show-method |
Class aafPathwayItem, a class for KEGG pathway id elements |