| AALoess | Normalises a set of gene expression data files using LOESS |
| AAProcess | Extracts raw expression data from Agilent expression array scanner files. |
| Baseline | Constructs a file with the mean of each probe from a set of raw expression array data files |
| Equaliser | Trims a set of gene expression data files to include only the set of identifiers common to all files |
| filenamex | A file name listing utility |
| IDswop | Mapping expression data across bioinformatic identifiers |
| Loader | A file choser utility file. |