Affymetrix Quality Assessment and Analysis Tool

Documentation for package ‘AffyExpress’ version 1.42.0

AffyInteraction	Analyze interaction effect and produce output
AffyQA	Microarray quality control and assessment
AffyRegress	Select differentially expressed genes, and output the result to a html file
Filter	filter an 'ExpressionSet' using different methods
import.data	Importing Affy Cel File
interaction.result2html	output differentially expressed genes for the interaction model to a HTML file
make.contrast	Create a contrast matrix
make.design	Create a Design Matrix
post.interaction	Create a list of tables for the result based on the main effect variable
pre.process	Data Preprocessing
regress	Run regression to fit genewise linear model
result2html	output differentially expressed genes to a HTML file
select.sig.gene	select differentially expressed genes based on p value and/or fold change
testData	AffyBatch instance testData