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| affycomp | Assessment functions |
| affycomp.compfig2 | Auxiliary functions to create comparitive Figures |
| affycomp.compfig2b | Auxiliary functions to create comparitive Figures |
| affycomp.compfig3 | Auxiliary functions to create comparitive Figures |
| affycomp.compfig4a | Auxiliary functions to create comparitive Figures |
| affycomp.compfig4b | Auxiliary functions to create comparitive Figures |
| affycomp.compfig4c | Auxiliary functions to create comparitive Figures |
| affycomp.compfig5a | Auxiliary functions to create comparitive Figures |
| affycomp.compfig5b | Auxiliary functions to create comparitive Figures |
| affycomp.compfig5c | Auxiliary functions to create comparitive Figures |
| affycomp.compfig5cde | Auxiliary functions to create comparitive Figures |
| affycomp.compfig5d | Auxiliary functions to create comparitive Figures |
| affycomp.compfig5e | Auxiliary functions to create comparitive Figures |
| affycomp.compfig7 | SD Assessment Functions |
| affycomp.compfigs | Assessment Plots |
| affycomp.compfigs.auxiliary | Auxiliary functions to create comparitive Figures |
| affycomp.compfigs.calls | Assessment Plots |
| affycomp.figure.calls | Assessment Plots |
| affycomp.figure1 | Auxiliary functions to create Figures |
| affycomp.figure1b | Auxiliary functions to create Figures |
| affycomp.figure2 | Auxiliary functions to create Figures |
| affycomp.figure2b | Auxiliary functions to create Figures |
| affycomp.figure3 | Auxiliary functions to create Figures |
| affycomp.figure4a | Auxiliary functions to create Figures |
| affycomp.figure4b | Auxiliary functions to create Figures |
| affycomp.figure4c | Auxiliary functions to create Figures |
| affycomp.figure5a | Auxiliary functions to create Figures |
| affycomp.figure5b | Auxiliary functions to create Figures |
| affycomp.figure5c | Auxiliary functions to create Figures |
| affycomp.figure5d | Auxiliary functions to create Figures |
| affycomp.figure5e | Auxiliary functions to create Figures |
| affycomp.figure6a | Auxiliary functions to create Figures |
| affycomp.figure6b | Auxiliary functions to create Figures |
| affycomp.figure7 | SD Assessment Functions |
| affycomp.figures | Assessment Plots |
| affycomp.figures.auxiliary | Auxiliary functions to create Figures |
| affycompPlot | Assessment Plots |
| affycompTable | Expression Assessment Table |
| assessAll | Assessment functions |
| assessDilution | Assessment functions for Dilution Data |
| assessFC | Assessment functions for Spike In Data |
| assessFC2 | Assessment functions for Spike In Data |
| assessLS | New Assessment functions for Spike In Data |
| assessMA | Assessment functions for Spike In Data |
| assessMA2 | New Assessment functions for Spike In Data |
| assessSD | SD Assessment functions |
| assessSignal | Assessment functions for Spike In Data |
| assessSpikeIn | Assessment functions for Spike In Data |
| assessSpikeIn2 | New Assessment functions for Spike In Data |
| assessSpikeInSD | New Assessment functions for Spike In Data |
| dilution.phenodata | Phenotypic Information for Dilution Study |
| exprset.log | Take log base 2 of Expression |
| hgu133a.spikein.phenodata | phenotypic information for HGU133A spike in study |
| hgu133a.spikein.xhyb | Cross hybridizers |
| mas5.assessment | Example of the result of assessments |
| read.dilution | Read Expression Date Sets |
| read.newspikein | Read Expression Date Sets |
| read.spikein | Read Expression Date Sets |
| readin | Read Expression Date Sets |
| remove.hgu133a.xhyb | Remove crosshybridizers |
| SD | SD Assessment Functions |
| spikein.phenodata | phenotypic information for spike in study |
| tableAll | Expression Assessment Table |
| tableDilution | Expression Assessment Table |
| tableFC | Expression Assessment Table |
| tableFC2 | Expression Assessment Table |
| tableLS | Expression Assessment Table |
| tableMA2 | Expression Assessment Table |
| tableOverallSNR | Expression Assessment Table |
| tableRanks | Expression Assessment Table |
| tableSD | SD Assessment Functions |
| tableSignal | Expression Assessment Table |
| tableSpikeInSD | Expression Assessment Table |