| cutFile | Cut a file and return individual columns |
| inputEx | A fictitious aCGH data set |
| inputEx-sp | A fictitious aCGH data set |
| inputEx.nona | A fictitious aCGH data set |
| inputToADaCGH | Convert CGH data to ff or RAM objects for use with ADaCGH2 |
| outputToCGHregions | ADaCGH2 output as input to CGHregions |
| pChromPlot | Segment plots for aCGH as PNG |
| pSegment | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentBioHMM | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentCGHseg | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentDNAcopy | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentGLAD | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentHaarSeg | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentHMM | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |
| pSegmentWavelets | Parallelized/"unified" versions of several aCGH segementation algorithms/methods |