bin/strainify
share/strainify/LICENSE
share/strainify/README.md
share/strainify/Snakefile
share/strainify/build_env_setup.sh
share/strainify/compute_abundances_all_v3.py
share/strainify/conda_build.sh
share/strainify/config.yaml
share/strainify/count_reads_parallelized_v2.py
share/strainify/documentation/tutorial.md
share/strainify/environment.yaml
share/strainify/example/fastqs/paired/10x_ratio_1_r1.fq.gz
share/strainify/example/fastqs/paired/10x_ratio_1_r2.fq.gz
share/strainify/example/fastqs/single/10x_ratio_2.fq.gz
share/strainify/example/genomes/E24377A.fna
share/strainify/example/genomes/H10407.fna
share/strainify/example/genomes/Sakai.fna
share/strainify/example/genomes/UTI89.fna
share/strainify/filter_genomes.sh
share/strainify/filter_variants_v2.py
share/strainify/images/Strainify_logo.png
share/strainify/images/Strainify_workflow.png
share/strainify/maf2vcf_v2.sh
share/strainify/metadata_conda_debug.yaml
share/strainify/strainify
