../../../bin/seqnado,sha256=S8Wleg5ik-giA3Sq9ZVulc6ZZjP04qX9dVqcBU4rvVQ,439
containers/Dockerfile,sha256=_7GF5ywgzsS31m2QwkGWrLDVQIK3veiox8VjMIuoiYw,2159
containers/docker-compose.yml,sha256=IMZpf67rVrWaYAag-vBMxEBKz5qncjFoGK_hO-b7ZhA,1972
containers/ml_cpu/Dockerfile,sha256=_exdx2PR59LGIuOSg-DwQlV8DV1EDz6zHJxoEEFmIGw,1433
containers/ml_cpu/seqnado_ml_cpu.def,sha256=n66SeqnTDwv013KvFFIrxSxXX5uyqoQQOZmxtP_7NK0,1486
containers/ml_gpu/seqnado_ml_gpu.def,sha256=rKLgpP3rn2i4O5BRuGKySMaV0r2PTPmvTO_z8yWPnLo,1056
containers/pipeline/Dockerfile,sha256=nDbbtXcM4I4I-ch96wD9bMUYqG53fM_4QqyAFRt7cS4,3759
containers/pipeline/environment_pipeline.yml,sha256=9WQBJMpXlmPltblSy7plOpJWGwYcSdJtVNvm_xxgGKw,1907
containers/pipeline/multiqc_config.yaml,sha256=24c7-HTH6YM9kU4WeDe4FNDqz7KPVJiMVlCoaeFM23c,501
containers/pipeline/seqnado.png,sha256=AbbsVM12BBh24PEPMzsiPzOlLb0Qxzm6k6Kc9NiXl54,83019
containers/pipeline/seqnado_pipeline.def,sha256=OfECb2Qrk39dLjGFsdEGvCmaNDUGZ19DK1l6dvPwM88,2825
docs/SUMMARY.md,sha256=AZfwRDBbbQVVfq3Hs8To5Mfp-6uPYSwOFWFttKKGsWQ,962
docs/api/config.md,sha256=vSEdu8bApyjg8t1OkIueDxIMd5cogdqeYzoBcvPIdS4,717
docs/api/core.md,sha256=W3HMv1qFBpzr3ssNIqJ3YOzkJ2AGGhOnzhtejqHfcAM,207
docs/api/index.md,sha256=gKmjw8-GQwDK73NOrMiXqM2R_B6nXhMGzUbIl8YvWEY,600
docs/api/inputs.md,sha256=CLXNlhZw8-xekZ9RRUAhNI1TtwvawjFc3EX5wba-Wnw,356
docs/api/outputs.md,sha256=bGNjc_R4xEjveCKK4CY6lYhIZJ3e7M9r0zaqR2ybAs8,219
docs/citation.md,sha256=oi2n45qb4vnD6jjUZZPM5NmoEJe0lR4AGgvMEfoTUpc,19065
docs/cli.md,sha256=4Tvf3nnGXSpXL_971HeAIjWBoPnL4fHYhFwIm9tD2EA,14418
docs/cluster_config.md,sha256=Gec7K6zDYpQS69TTWmfhmDLLpeiM8rqdU2twDy6FBaA,5916
docs/configuration.md,sha256=q25p5hni_ZTYOih4uvUB4jWrmpYCQql3rnVCDZBAiss,22057
docs/design.md,sha256=b1eGBTxenfHjy00QPscj9M5V55HwUtm6i-8u6xscTsU,11895
docs/examples.md,sha256=glAURpti6m_4kB9eYzPPWzsH-ibdNwG-i7dzkLy_anI,12205
docs/faq.md,sha256=GiUMIFn1SmDJxL5a7__VrmHDYkPjHFSPG984Mghfrtk,2136
docs/genomes.md,sha256=0ctU-d5WCfkSndvIc_QJ9dvwU3peSsK71aBpp4B_1xk,7528
docs/geo_download.md,sha256=RhMzpbQm9yUWPBQjnFCW5s9lt_vfoUe5V_GDckJ2t9c,4801
docs/index.md,sha256=hXCogM3vg-QLCi5yQ0YPMx1mEdCCBkBj4A-g1ueKC5o,3601
docs/initialisation.md,sha256=cozKYbn7DX4ClFapS06F6-fhcQt71fgaHuJvxumP-2o,732
docs/installation.md,sha256=Er8SEx6WF6VNmUWKxt5Heuaxj2RFITuusCU3dJTZp6U,1414
docs/javascripts/mathjax.js,sha256=mtpzYYl8QS6Sw9cciOJrALVMV5qm0IZM0Pgep2c7uEA,241
docs/javascripts/toc-collapse.js,sha256=ZTZxonTaqUSnf0vfeim4o-SAheENL2tJN9fCA3rnhzE,1622
docs/normalisation.md,sha256=P7nDU6G3NT-gSMQSU0zpprODmI93sFoCxsRASS1ifMA,22191
docs/outputs.md,sha256=Ua60Bzxc3UOYWur8tTiI8jdUknz4J9vCk5GHlB6AEu0,24104
docs/pipeline.md,sha256=UWQwZHPzBXtrcsV17ggMkbLk39Hc4ap1IgjtDC23T2k,19266
docs/quick_start.md,sha256=Xc-MBnCAiz3pYklN7LFEGuFUkLvOZqpB72Hc9O6UW94,9429
docs/scripts/__pycache__/generate_tool_citations.cpython-314.pyc,,
docs/scripts/__pycache__/hooks.cpython-314.pyc,,
docs/scripts/__pycache__/third_party_tools_config.cpython-314.pyc,,
docs/scripts/generate_tool_citations.py,sha256=31yD1aRF11oPTNqlq6QUpdR6Spx-_Z2EsrDizZiahCc,9813
docs/scripts/hooks.py,sha256=zy2VNhIctQE1qyIT4gsFV9CQiKFR3YEk0sYz0SUiBTs,1358
docs/scripts/third_party_tools_config.py,sha256=xOyz6RxU1W-9y7yKM7bfIjwjMh8TBPmRd5I6e3SuCls,17443
docs/stylesheets/extra.css,sha256=XfWk-wrcUfhme5n5adq91QwcJ4lhpWCCCT9RDE8Ezt4,6139
docs/tools.md,sha256=pnW3oPNdQJU2KLAjeCEGn5IEXVDAH4mP4TZUfyORBNM,819
docs/troubleshooting.md,sha256=treVkEZfGW9SuTPie_3kSF0sUUSk8y6BHjqreKgwZMI,13268
seqnado-1.0.6.dist-info/INSTALLER,sha256=zuuue4knoyJ-UwPPXg8fezS7VCrXJQrAP7zeNuwvFQg,4
seqnado-1.0.6.dist-info/METADATA,sha256=3G7mDCjFY-pvFkYLsFMfXYAntsukTkn-k5vkeMuVUUE,52586
seqnado-1.0.6.dist-info/RECORD,,
seqnado-1.0.6.dist-info/REQUESTED,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
seqnado-1.0.6.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
seqnado-1.0.6.dist-info/direct_url.json,sha256=VnyAghhfxp7EHtSgZkpPXBJfUXBC3ZM_j5r_0qZ0wTs,81
seqnado-1.0.6.dist-info/entry_points.txt,sha256=QxZWAp8Roy7p5v1geH1KdJFfECRh37iqUyFg_yPnqWo,44
seqnado-1.0.6.dist-info/licenses/LICENSE,sha256=YF6QR6Vjxcg5b_sYIyqkME7FZYau5TfEUGTG-0JeRK0,35129
seqnado-1.0.6.dist-info/top_level.txt,sha256=om-hpDvS85JXF2U5hCogw0mCVv-nFBDoCe5JKpQMeZk,24
seqnado/__init__.py,sha256=maeRzSl72keKKSEKGJ64DQ14L-ommHYisFW05dHhyGM,1018
seqnado/__pycache__/__init__.cpython-314.pyc,,
seqnado/__pycache__/_version.cpython-314.pyc,,
seqnado/__pycache__/core.cpython-314.pyc,,
seqnado/__pycache__/utils.cpython-314.pyc,,
seqnado/_version.py,sha256=r9csd7YQr6ubaa9S-K5iWXSr4c-RpLuQWy5uJw8f4MU,704
seqnado/cli/__init__.py,sha256=9qLDxaXLUhwnWDm1dj4QFheh5WXl5DLtB4D44n_lokY,1185
seqnado/cli/__pycache__/__init__.cpython-314.pyc,,
seqnado/cli/__pycache__/app.cpython-314.pyc,,
seqnado/cli/__pycache__/app_instance.cpython-314.pyc,,
seqnado/cli/__pycache__/autocomplete.cpython-314.pyc,,
seqnado/cli/__pycache__/benchmark_helpers.cpython-314.pyc,,
seqnado/cli/__pycache__/data_validation.cpython-314.pyc,,
seqnado/cli/__pycache__/multiomics_helpers.cpython-314.pyc,,
seqnado/cli/__pycache__/snakemake_builder.cpython-314.pyc,,
seqnado/cli/__pycache__/tools_helpers.cpython-314.pyc,,
seqnado/cli/__pycache__/utils.cpython-314.pyc,,
seqnado/cli/app.py,sha256=uL3VsKLwkaTVUvLw99_n4DuxrGiTuBjOCjFgJeikMMk,1450
seqnado/cli/app_instance.py,sha256=2e_I0ycwRlOafKMp7jnWvEuoFUjXv-LSoYERbBdXPaI,1252
seqnado/cli/autocomplete.py,sha256=6DG11iNseGnF9-5Ab-QDj692yRSR4bShToh6MK_Ic5g,2195
seqnado/cli/benchmark_helpers.py,sha256=_1ZUfmlC_N9_l5FMOhBkj1SXk2JdeLjGYcIwsQmpWZ0,79876
seqnado/cli/commands/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
seqnado/cli/commands/__pycache__/__init__.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/benchmark.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/config.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/design.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/download.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/genomes.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/init.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/pipeline.cpython-314.pyc,,
seqnado/cli/commands/__pycache__/tools.cpython-314.pyc,,
seqnado/cli/commands/benchmark.py,sha256=CogQTSjMMRJdEInpyUNyzXYafIoHqsWYSuuu70jmaUk,6967
seqnado/cli/commands/config.py,sha256=rCVYpF_apuEd_R5A5N9iffBg51BzWU3Ik0polEdxs1M,8865
seqnado/cli/commands/design.py,sha256=Fppaf61wCIseCjEdEKEYdqEI9_6uxKLU9MIIQsyS-zQ,9665
seqnado/cli/commands/download.py,sha256=Gp5xnirZ0LfFJTJmDmY4y_1VFUpzFMcbdULdEgm1jpA,9793
seqnado/cli/commands/genomes.py,sha256=B3UhKwSS9Dtkkxke_jEbXlOCYybKNHjpeC9b2x0dPls,10550
seqnado/cli/commands/init.py,sha256=udloSvONxZQPeRnVpzO9ErF3V8BCuWunRstRJpi-Ix0,6423
seqnado/cli/commands/pipeline.py,sha256=Zn80BhHVrSXwMF99R3l6E3uA-TXsFDxCvenjLuiBE6g,14350
seqnado/cli/commands/tools.py,sha256=A7c-WOFQR2Oc2ecropczAdlllcO9w-nqfGboxToogt8,8858
seqnado/cli/data_validation.py,sha256=p8BwK1G_zMGfR1rU44qMmL6kfx10tYZvMhkCbx5mMlI,18299
seqnado/cli/multiomics_helpers.py,sha256=5LE_1-hg8jcHDPpkOY5TpjbnB3yceJ8JGd4b9AvPHYI,2339
seqnado/cli/snakemake_builder.py,sha256=fQ8ZOzaTIVJ4x0nNOVndzWVwqMH6oPuOtTpoHJJT1Ng,8039
seqnado/cli/tools_helpers.py,sha256=kysZ-mf1P9DP_JAmbH0ZH_1E_00BkHpJ7awI8CytW84,5779
seqnado/cli/utils.py,sha256=Ej-Qw6mvCNru4T5JH7ZzHiNuehOlhRM5XUKAtToSKmo,14004
seqnado/config/__init__.py,sha256=MV8qL61AC4PLNaEAIrsEmGZyrvnM23hgnoGzoi9Xoqs,1618
seqnado/config/__pycache__/__init__.cpython-314.pyc,,
seqnado/config/__pycache__/configs.cpython-314.pyc,,
seqnado/config/__pycache__/core.cpython-314.pyc,,
seqnado/config/__pycache__/fastq_screen_generator.cpython-314.pyc,,
seqnado/config/__pycache__/geo_submission.cpython-314.pyc,,
seqnado/config/__pycache__/mixins.cpython-314.pyc,,
seqnado/config/__pycache__/multiomics.cpython-314.pyc,,
seqnado/config/__pycache__/third_party_tools.cpython-314.pyc,,
seqnado/config/__pycache__/user_input.cpython-314.pyc,,
seqnado/config/configs.py,sha256=l8eIQ5Eoc1h8RvPjh_0x7OuBLQybuVqYpHsEbBbm3uY,18237
seqnado/config/core.py,sha256=Dmfc4RvRvD8s30yFZEZJTTccRbYtZJ7xp5keFgJLa6A,10671
seqnado/config/fastq_screen_generator.py,sha256=FzYtuWR7iLW_bg2ofwEGLFHJwH4RKakd2KfRQoj5k_o,8164
seqnado/config/geo_submission.py,sha256=oGgpIJEFpfGF1GDwhWXSS-Wmajc1G-z-KeaRFlL6h5Q,3928
seqnado/config/mixins.py,sha256=OsBUsMGELP9PwJpztbJwwJKVqbCksAaRKI7u2g-w9VM,7357
seqnado/config/multiomics.py,sha256=JPSEgBIyg11J9buO-cY9MGogxfid94YaQ2E5YMg6L3Y,1352
seqnado/config/third_party_tools.py,sha256=MGt-cxZkYUAPpY35U1-dTBWizm_mG3AgmtgX59DPgKg,34162
seqnado/config/user_input.py,sha256=q55-dWNZFHl1KfaWFm6fn_CeOiSFbfk7O-HgRZUUVAs,40416
seqnado/core.py,sha256=swn7n36CI29_XnGGpL3f-aqkl-RB1pw0jBS-Sila4r0,5995
seqnado/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
seqnado/data/__pycache__/__init__.cpython-314.pyc,,
seqnado/data/config_template.jinja,sha256=p_kxYl7VqagwUVqP4r0ByHc9nACWiJe6lEwMaGR7LTA,1666
seqnado/data/deseq2.qmd.jinja,sha256=CdwHnvEEfTjg_fQUyT2N-DU7nPX6gz-wfT3T7qdg9FQ,16309
seqnado/data/genomes_template.json,sha256=5TqGqMn3ga9QcqCHV78IbnjU0K_Roi5DbrbqHapAMds,445
seqnado/data/geo_upload_instructions.txt,sha256=ctyxKHooWXn1ciNrRl-0Q5Nw1ki2E3C0_oUsneo-qiw,840
seqnado/data/logo.txt,sha256=1Ziyuz4zPrFvrJallMWuqFZMOLLn7yek-wCDUk8drmQ,2168
seqnado/data/preset_genomes.json,sha256=nBSBfbMz4LDLh0prYOcMkpiY5z8s4GpRBRVlDkJE0cI,6111
seqnado/data/seqnado.png,sha256=AbbsVM12BBh24PEPMzsiPzOlLb0Qxzm6k6Kc9NiXl54,83019
seqnado/init.sh,sha256=nghmmsAwUV63ih00KBwrZ01qlkeOyixTZbNfYqPzUas,853
seqnado/inputs/__init__.py,sha256=25zZLAh0rjdpE5a9sHoK7UKMzbIVnE1UYTRazPWLH84,642
seqnado/inputs/__pycache__/__init__.cpython-314.pyc,,
seqnado/inputs/__pycache__/bam.cpython-314.pyc,,
seqnado/inputs/__pycache__/bigwigs.cpython-314.pyc,,
seqnado/inputs/__pycache__/core.cpython-314.pyc,,
seqnado/inputs/__pycache__/fastq.cpython-314.pyc,,
seqnado/inputs/__pycache__/grouping.cpython-314.pyc,,
seqnado/inputs/__pycache__/helpers.cpython-314.pyc,,
seqnado/inputs/__pycache__/interfaces.cpython-314.pyc,,
seqnado/inputs/__pycache__/validation.cpython-314.pyc,,
seqnado/inputs/bam.py,sha256=wl0Wzx9QnA_7u5MtuBW-_M6bx5_WvMppeqDYiqmBBwc,6045
seqnado/inputs/bigwigs.py,sha256=X4FfuZt-VgfqI_cf7r9L-atbqb25kxKPjwtGOLJcfeE,6909
seqnado/inputs/core.py,sha256=S20ZhyLJOthtP4AQXp2x0fx6D2E6G_f6cDX5sLXnvWg,9188
seqnado/inputs/fastq.py,sha256=A8NCAz3M0zLrQfEVBwRfs_2BKQxo2BCZoLDQhPbezsg,41874
seqnado/inputs/grouping.py,sha256=E9zuws4wLjtOKddWjRiWz0ZZ5E2HwR9aZ2QcfYvLxVA,3635
seqnado/inputs/helpers.py,sha256=qXSO14IvE9oITYe-qCHO9zRQHL1bh9CIHtjjZatzZow,2054
seqnado/inputs/interfaces.py,sha256=fnMgj255aoROhAbkRhcZeKnlIxLxTlMwQjx7zf_GXpQ,2505
seqnado/inputs/validation.py,sha256=LoP_sWqOBRdcPEIpGJ11uAOL8xfWzD7gyDCh-npdbN4,4125
seqnado/outputs/__init__.py,sha256=hucssZxuggXjvoIHHQau7G05I16j5h2TKIplTKTpD1Q,263
seqnado/outputs/__pycache__/__init__.cpython-314.pyc,,
seqnado/outputs/__pycache__/core.cpython-314.pyc,,
seqnado/outputs/__pycache__/files.cpython-314.pyc,,
seqnado/outputs/__pycache__/multiomics.cpython-314.pyc,,
seqnado/outputs/core.py,sha256=zu1efCvXOSDR_u5jx-gCbqkUiXTbQ0DQGOdd4LGy-nw,59548
seqnado/outputs/files.py,sha256=7q1zaLZZ_cWjciKi-MBEzpb8sB3ZaqPdd2yLPraP468,39770
seqnado/outputs/multiomics.py,sha256=aI5OtqYKg5b6XlMndLlQfMEq3FKNMiR89GA1nDiRFyk,3500
seqnado/tools/__init__.py,sha256=FJNTbe5a6WdiYDKSjWenw7FmccSW_I_RPam_-fsIFRw,1058
seqnado/tools/__pycache__/__init__.cpython-314.pyc,,
seqnado/tools/__pycache__/container_strategies.cpython-314.pyc,,
seqnado/tools/__pycache__/tools.cpython-314.pyc,,
seqnado/tools/__pycache__/version_parsing.cpython-314.pyc,,
seqnado/tools/container_strategies.py,sha256=YJh6bG6t40MJ4WOa6Lgh5opeyE6rDVBVCf8o_G-AM8k,10412
seqnado/tools/tool_citations.bib,sha256=3jOF0eoc7YD9A-1mfg4vJs57ALlZDWS7-15KmJimT98,17416
seqnado/tools/tools.json,sha256=b7z3AvECoSX3Vz1ZjI_jnHcGbrNs5H5n_VwzuGRBtlI,18890
seqnado/tools/tools.py,sha256=ebhREiJAb-wXLP0bTNVpZJXxO_aDR7FirtUSfktV3jE,19233
seqnado/tools/version_parsing.py,sha256=IxUHtV4GJ6Iaq91LkdFBrnirEM_h7vynU49-na66Dx0,4069
seqnado/utils.py,sha256=nr9__t6_mEmV1rYrUWdrcaSz69TUWbv3aKUSBJxLXoU,13874
seqnado/workflow/Snakefile,sha256=PB5x7_fJp_ENhsNrnJ1aBr3JTi_V3cw01rMh95Z01eg,7523
seqnado/workflow/Snakefile_genome,sha256=80rz8P7TqRY5YJxKOMA54MBLG2HBmVfRX25kzNIhlLY,4333
seqnado/workflow/Snakefile_multi,sha256=GUjg6N0bzOKgqP7WTjmRSjZQqOqiZJ-F3xVHFcdZb64,3947
seqnado/workflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
seqnado/workflow/__pycache__/__init__.cpython-314.pyc,,
seqnado/workflow/envs/profiles/profile_aws/config.yaml,sha256=1UVF4BJIdlMxRN1GPSRyHaOG0xhUmprBj4ZsQ_JI0qo,214
seqnado/workflow/envs/profiles/profile_local_conda/config.yaml,sha256=Dq1WlB_NAmkPtskaMEduH_ekF65A8teMGbIB1lxFolI,161
seqnado/workflow/envs/profiles/profile_local_docker/config.yaml,sha256=7XK7B491YG1T4MXOJdUANtVyp4TrM9mI18LGsjAExsg,199
seqnado/workflow/envs/profiles/profile_local_environment/config.yaml,sha256=LtDoYDYCn1Qpi5r5uzCfgDBlChNVfe4buB-OjtbEHxk,162
seqnado/workflow/envs/profiles/profile_local_singularity/config.yaml,sha256=7XK7B491YG1T4MXOJdUANtVyp4TrM9mI18LGsjAExsg,199
seqnado/workflow/envs/profiles/profile_slurm_singularity/config.yaml,sha256=1TfG78Wjp5r42uOzjAawjEH08016mQZKDoE9o0atrVI,428
seqnado/workflow/envs/profiles/profile_test/config.v8+.yaml,sha256=7XK7B491YG1T4MXOJdUANtVyp4TrM9mI18LGsjAExsg,199
seqnado/workflow/helpers/__init__.py,sha256=b7iN4DA_6NqlAST8agkhC8Cit-5l1pvjxg7f3kWZcQ0,1912
seqnado/workflow/helpers/__pycache__/__init__.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/bam.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/common.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/crispr.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/geo.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/mcc.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/multiomics.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/normalization.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/peaks.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/pileup.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/qc.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/quant.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/read_logs.cpython-314.pyc,,
seqnado/workflow/helpers/__pycache__/visualise.cpython-314.pyc,,
seqnado/workflow/helpers/bam.py,sha256=QiIAC4LvkzyIfbAe4NFMYtQAxVinhFEft9EKFVLRXVw,1112
seqnado/workflow/helpers/common.py,sha256=t1Cdrl6eA15w_FaGNSfiMRJfALSwM17eGVzCYruefr8,6588
seqnado/workflow/helpers/crispr.py,sha256=55j4LyhUBLx5c6UVXB8RBGceYGJ1WoF7lB8tidFCRBc,1854
seqnado/workflow/helpers/geo.py,sha256=tEgSqsgoaauYB2dHmvI_sf5_Ep6GfO9BBpCZ0AvIF8o,3236
seqnado/workflow/helpers/mcc.py,sha256=XLlZL3k9GW0TWtyN4Hw3R7GZ7xsj_UX-Ux2QGq2sLLk,5560
seqnado/workflow/helpers/multiomics.py,sha256=MRljUCwsksvmtO4aXaXsR8wxJ1RWoXElI-VG_9_KyiU,480
seqnado/workflow/helpers/normalization.py,sha256=UAQQ_2HV_t7Ku2e-Cy5dZoo9KnIQyjoqVRrWkIHhPCM,6491
seqnado/workflow/helpers/peaks.py,sha256=WpbzEHyMRt5V_rcNg2UxspoUAH35GenRNgl-VYB6Zww,3626
seqnado/workflow/helpers/pileup.py,sha256=W4f8YXFNt_rEIgCEmnR9EZPfOtSqdGQLc0Hp5G2CD68,1562
seqnado/workflow/helpers/qc.py,sha256=g_cpfzgtBxPQfouj5inEMocmQVdIvdjTwrLuAj1bEWE,2355
seqnado/workflow/helpers/quant.py,sha256=XSY-nF_DGykOOGBXrqTQO-fmTAZ7UIAhx3DboPNPs3U,3248
seqnado/workflow/helpers/read_logs.py,sha256=YxaYT9R_Sl9ek9ft-zZFKp_HuUNPkIz996mcRtubFPA,1225
seqnado/workflow/helpers/visualise.py,sha256=fA2XipdhBw5nuiZPNeWRPB7EmdOomKnjnNzDYjXYvCg,1303
seqnado/workflow/rules/alignment/dna.smk,sha256=FkrkMiwU5V1te80RbBByuHyqsoqgLoqzj4lZ73cw30Q,3327
seqnado/workflow/rules/alignment/rna.smk,sha256=wby_MjEmhnfSPRm3I2TM8MWQ_txtI3WcqcWuXMB665A,4896
seqnado/workflow/rules/bam/all.smk,sha256=CfiDSPp7Pk8f8gQpoaQqDknH7OK5qzim812Nf1N-52Y,140
seqnado/workflow/rules/bam/blacklist.smk,sha256=1UAiaoubVgTpjU_bIuN47n5IxWStFtnfLHCUWS6ni-0,3538
seqnado/workflow/rules/bam/duplicates.smk,sha256=IJlzBmsC2YDgUidkZGwC7DcZu6O8jHS9aFr3Q2zi3Og,5892
seqnado/workflow/rules/bam/filter.smk,sha256=1BgT2rdz3wvOu2rdgeIffJJOJLF9jmhZjYzNXD42uP0,1808
seqnado/workflow/rules/bam/index.smk,sha256=o5f8ryEZJKE4ktUr2hbMvSFi_2n2QyL903Tqf1eudDM,4221
seqnado/workflow/rules/bam/manipulate.smk,sha256=mC-OWvJNDejSQQNO8GG9YQUP6hHQOUvvN2M_wwd-zHc,4636
seqnado/workflow/rules/bam/merge.smk,sha256=RX0iyjR0uq4dSXbj1z-qnpeBSCfplmbpu2IzbVCUsmw,2362
seqnado/workflow/rules/common/utilities.smk,sha256=-6EUAUv8bUpjQ6FMcRrR6N19EDH5V8D_SSOfFiNV0UY,3997
seqnado/workflow/rules/crispr/adapters.smk,sha256=Mv80Do_SfresPwZMWxEa4nmianwsFsd8mKR0o9JHZY8,2190
seqnado/workflow/rules/crispr/align.smk,sha256=GiadLV_Hrz3C7nG7uMkfR-4f5QeBXXM4xty63yf72vQ,3572
seqnado/workflow/rules/crispr/all.smk,sha256=teC1_M7FXSiAIWgZzDowHJrNlZ5U9tOMnAumqzgx-cM,116
seqnado/workflow/rules/crispr/feature_counts.smk,sha256=qTMRKjnI9qoy4nTG8Hq8oUCO7QafwSNOPdM-tnYhx8Y,1463
seqnado/workflow/rules/crispr/mageck.smk,sha256=b5Pqaf3veVkSNbg5EACRanoqr443iFYwKPluMapKpF4,7782
seqnado/workflow/rules/crispr/trim.smk,sha256=nQI_d1XyBCALXL_torT_rfeOy6NjYb68WihCHy8VdhY,2469
seqnado/workflow/rules/dataset/dataset.smk,sha256=SYDV-Njh1lBzANHp4XAy3nD4MwYXnUqLVnlVREJmKEE,4621
seqnado/workflow/rules/dataset/multiomics_dataset.smk,sha256=URkKoZjjaBwVRld449--itU6k38efRwCc_Vg5QDZDj8,1926
seqnado/workflow/rules/differential/rna.smk,sha256=b8d6Vhb8d4_ZZFa6Aaqb_DD9uKgST8PRHBk1Km8k-xY,2395
seqnado/workflow/rules/fastq/manipulate.smk,sha256=Q7zu22EMbFgvYPpgIhppgGZp5Qqc6Tf4k9q4adW-PzI,1975
seqnado/workflow/rules/fastq/screen.smk,sha256=sles6ZPuNHZUJoaZVzNRFOMYA06A1pfsNc-RcRpGI8U,2646
seqnado/workflow/rules/fastq/trim.smk,sha256=zjgWghtTQuMZeNA1Qy_ii6odgPFLq6FSEzsCI00KODk,2751
seqnado/workflow/rules/genomes/build_index.smk,sha256=WnIPtHC0hlYWFIwgt2CH8LYT7QmH8LSR7b56wcFbsII,10412
seqnado/workflow/rules/genomes/download.smk,sha256=nheiDWkIaF_F5x-E47-vZon6TMVC367uUgyldZn4VsQ,4245
seqnado/workflow/rules/geo/download.smk,sha256=JLRsMfTYt3yrATRQz6Ca5qo1qx3VaU6Z4r5Hyf5srKk,6806
seqnado/workflow/rules/geo/submission.smk,sha256=0oo5YTmF-mcW1n0fhLF0LyLqxdmaynbNMp0y2G3OHpY,8465
seqnado/workflow/rules/mcc/all.smk,sha256=3Q6_JVgkVEn4QkKhU0s0jmJq9mrfoaoanO6KGrTIMHo,222
seqnado/workflow/rules/mcc/common.smk,sha256=7ivkdIUrJR1s_8n9yv8Mgdf974GLlIQcEJrHkuYqWXE,1714
seqnado/workflow/rules/mcc/compare.smk,sha256=S9pkRdf7Vs-5vNj8m0W_AXE-reSgEbfZTwk1R8qPwAM,2943
seqnado/workflow/rules/mcc/identify.smk,sha256=wcfLymYG6M6_Yi1dKk8YgQeZrpqAEh6dUJJgAnLaNgg,3375
seqnado/workflow/rules/mcc/interactions.smk,sha256=2MzC1UpVa2QsNhP95N0P6K71QabavoIIntiugg7oxtc,10487
seqnado/workflow/rules/mcc/map_to_genome.smk,sha256=ihsuhAvTgnlj1r8SBxI9ewCQ2Njqy52nCzGJfnRE9Sk,4265
seqnado/workflow/rules/mcc/map_to_viewpoints.smk,sha256=KhhSuEVQrxHYXLgG7v2ug7jAEQgip9-K7sgxCbeEZQU,2474
seqnado/workflow/rules/mcc/peaks.smk,sha256=EozRn0YzEKPgNPrvwyuUJgpybO8Mr2pSb1pSmPzPUpQ,3153
seqnado/workflow/rules/mcc/pileup.smk,sha256=JQdQJHiiiqwbA2kyugH8QD2qBM0zZShIQ3qzTnmNY8Q,5732
seqnado/workflow/rules/mcc/stats.smk,sha256=Afh0KJiFgsm6Hkgj6cTGjyi4wCNQDGZq9pBYRZw0Da8,1146
seqnado/workflow/rules/meth/calling.smk,sha256=FesPZMcO0kxLZJcRGRXFRSAyq1pg2cLqFKJP3W9ZvUs,7960
seqnado/workflow/rules/motifs/motif.smk,sha256=gqux3uzaOsv3dW_TCCfvnSyPBfqINXBkYoGRNn604FQ,4138
seqnado/workflow/rules/multiomics/all.smk,sha256=k4swazVmGFDNHv75zNalSEUzzap9sJUNrjb8Nt0PuOU,67
seqnado/workflow/rules/multiomics/assays.smk,sha256=HVABDakIavuqtZ4aYVwjbrP_7saOvyB0rSoa-qZzEJs,1977
seqnado/workflow/rules/multiomics/browser.smk,sha256=gY2VtcSkFeORV4iQZgjtgzM4sz7wlVFoII8nmOCuDtE,1220
seqnado/workflow/rules/multiomics/heatmap.smk,sha256=DFypPnliwBOulEkek9lstA8kpCabD79fCFyLWsIrAWY,2705
seqnado/workflow/rules/multiomics/summary.smk,sha256=W3sX2Xp4pnwo_eevc2bJqPIVpqt3-y0--Azgjnc4uhI,1762
seqnado/workflow/rules/normalization/merged.smk,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
seqnado/workflow/rules/normalization/scaling.smk,sha256=I5wJfQ_kOM3l9DGSrlua4uXpF9K5vUWsshn5SFTNXbU,2397
seqnado/workflow/rules/normalization/spikein.smk,sha256=7hiR9fQT1agbtfslYTN-RXJpf9FjS3k0uYxKHVe9eSs,3605
seqnado/workflow/rules/peaks/default.smk,sha256=O8ZayuvR_N7dhpXdj17XYe9XeRHVyzuZKXoTf_wD8z8,16584
seqnado/workflow/rules/peaks/merge.smk,sha256=aUgvdC6_XkKV_Abr6F1ywedtjVLjR1XFp1rimP2zaTg,5067
seqnado/workflow/rules/pileup/common.smk,sha256=MXVu8Bc9vipiuhkbgFuEAitnO_9hWXrGGuBZUOh0BpU,2445
seqnado/workflow/rules/pileup/dna.smk,sha256=u2XtX1usFWJz_-Oa_xrPZ3ACWbiTT3n7T7AHQniw0h0,158
seqnado/workflow/rules/pileup/dna_default.smk,sha256=kjIobNQ8o9yRPoGR4ciDQUDPVBR-A-EzzLKkYMU2abw,6824
seqnado/workflow/rules/pileup/dna_merge_normalized.smk,sha256=_yp28BTTZxxj9RmOB9welje-CxAznIcGuRUpRpnXPow,7116
seqnado/workflow/rules/pileup/dna_merged.smk,sha256=fq9X5j4HG-MXsx2pW7SAb2tUXt_X6w4_APdWLRFWzk0,4855
seqnado/workflow/rules/pileup/dna_normalized.smk,sha256=O4owvv8DFuG9QcXeupHWS_8VmDfCVaUtI-hNsEDGf9o,9263
seqnado/workflow/rules/pileup/pileup_condition_compare.smk,sha256=W1YVxn_GSZPKQkZH9TNFJmIHFY3UOuxzsE02fIY-6cU,10964
seqnado/workflow/rules/pileup/rna.smk,sha256=GfUnUfummuyP8iatNyt_Wtht2jLSIxMD-p1DhB9gclE,158
seqnado/workflow/rules/pileup/rna_default.smk,sha256=puqqowCXpn7hZRbkamXZdb5RtriKyRcz-E0gBOYebjw,6377
seqnado/workflow/rules/pileup/rna_merge_normalized.smk,sha256=b6CUDWIDhDmLPgHUOauCqw0ODEJQenQAYzqHSK9hUg0,13737
seqnado/workflow/rules/pileup/rna_merged.smk,sha256=pDDz57Oi3qT2zhOwjSE3eTi5UGJG38JQKTOnHpaKi9k,7237
seqnado/workflow/rules/pileup/rna_normalized.smk,sha256=woZw-Y1TYr6xV0EohFAMKd9tIAQosrVJLHcHgynXZy4,12359
seqnado/workflow/rules/protocol/protocol.smk,sha256=FGrwKzBqAzmDKejJhpaO_kFQQTeKotjUQnxIo8xBw48,758
seqnado/workflow/rules/qc/qc.smk,sha256=JM71B-Zz6JqjXTkGtbhHskU3TLMy4l1kjF_CVpb8j1g,9341
seqnado/workflow/rules/quant/featurecounts.smk,sha256=bgqiB9lQ4wN_KBWewFlUNXYbtU4edb8Ub8g5jIp_7nw,2105
seqnado/workflow/rules/quant/merged.smk,sha256=dHchKnTgqri0Wi31TxpmP9PFRuOGXnx9IFyUSsti2zQ,2963
seqnado/workflow/rules/quant/salmon.smk,sha256=gzwYvVRTQ6fKUZHyE8n03DTngrTFpU6XOQ5AYKofAGw,3165
seqnado/workflow/rules/spikein/all.smk,sha256=6kEcGlXHgSbeLKwkuYAmKAtcZGGWiMLnCVFiIFooDIs,255
seqnado/workflow/rules/spikein/dna_spikein.smk,sha256=r-DWOW6T2Cw7E4vlJMTkSSZpf4n4SIYQ4iDiWb3Oc7o,1883
seqnado/workflow/rules/spikein/rna_spikein.smk,sha256=bl7wec5pyN4PjbvupDQOWP0DTiLSXXoqoxvhasGUk0U,1803
seqnado/workflow/rules/spikein/spikein.smk,sha256=EZMyquoiaStCSIydJCnlxL7dw0ZNpagiER4SH4g5mtU,5560
seqnado/workflow/rules/variant/annotate.smk,sha256=pNMbhv_mHToR9W__a0xmG1jZW-vOlIuGINLMAXbIYDw,1006
seqnado/workflow/rules/variant/call.smk,sha256=2rNIBCQGLNpSqTLAO6t14_U_g3SAzasxR1pbigS67Tk,2069
seqnado/workflow/rules/visualise/browser.smk,sha256=p2BlJ6tiduWcddI4MP1kYLZQhhQLkrDyr0S1d488rM8,23086
seqnado/workflow/rules/visualise/heatmap.smk,sha256=FZamjIRsdIQ0f3LKvu3KgG61oBnkVsXip0WAysS2PMc,39420
seqnado/workflow/rules/visualise/hub.smk,sha256=dzZX4EdpGnKofScdi4HxvqGYqZwnhc6gaWK0b0tSxwI,1779
seqnado/workflow/scripts/__pycache__/alignment_stats.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/calculate_csaw_scaling_factors.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/calculate_spikein_norm_factors.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/calculate_spikein_norm_orlando.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/create_hub_with_tracknado.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/create_mageck_design_matrix.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/deduplicate_fastq.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/detect_crispr_adapters.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/get_salmon_counts.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/mcc_combine_coolers.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/mcc_split_reads_aligned_to_viewpoints.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/methylation_conversion.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/produce_data_processing_protocol.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/remove_blacklist.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/run_plotnado.cpython-314.pyc,,
seqnado/workflow/scripts/__pycache__/tile_genome.cpython-314.pyc,,
seqnado/workflow/scripts/alignment_stats.py,sha256=8IKqz5PesRagttw2dJWf99cg5VZwO8UcJ0nRFadx9TA,1305
seqnado/workflow/scripts/calculate_csaw_scaling_factors.py,sha256=s4gOba-B-e-SVnj67SHGHJqEKF51kZjE-DupCXMYw8s,4760
seqnado/workflow/scripts/calculate_scaling_factors.R,sha256=gOBtguZEMp2XslQA-Smvg70myewzuC-9rh7ccKuTk8g,446
seqnado/workflow/scripts/calculate_spikein_norm_factors.py,sha256=bdC1f-NYKRc8HsAbfdaPKF_bcPjL2dXrOtRZVJyo2BA,2311
seqnado/workflow/scripts/calculate_spikein_norm_factors_deseq.R,sha256=vzvmLneowiV55TDycVFyMar0og_zD1DmOhVoyVUJxn8,4742
seqnado/workflow/scripts/calculate_spikein_norm_factors_edger.R,sha256=hRjUPWPf0EvkiZiYp5Q5vdv4pE0mGqUB4Hcrh7ACZxM,4744
seqnado/workflow/scripts/calculate_spikein_norm_orlando.py,sha256=kY7Eq_gw8XHwxYGTnL2p55KlfUN_Kd0rlfCo8h_YydU,1332
seqnado/workflow/scripts/create_hub_with_tracknado.py,sha256=EKYFN5mYsOF-QMuvy0OgE7idslYFZ0XuEkLsYXu8b1s,5538
seqnado/workflow/scripts/create_mageck_design_matrix.py,sha256=qtKAC0MHOkJZe727GZUgyzO671T6Br9WoNvfZ9IOmB0,3625
seqnado/workflow/scripts/deduplicate_fastq.py,sha256=6MW_4o_paxpH1nb2pcZ9ItT7D4GoTxLhmWDWdkUYnEE,211
seqnado/workflow/scripts/detect_crispr_adapters.py,sha256=MfPrYk3Di9NcevYbJw_j28OzXkIyL_Mcp5Kvv8Q_-uc,11077
seqnado/workflow/scripts/get_salmon_counts.py,sha256=g9aslTfKAHYw__W_ctzmqfQepdDZcQKGFQTRwpqbHgw,933
seqnado/workflow/scripts/mcc_combine_coolers.py,sha256=YI4P5q8OqZzyB9C-GzJGhW5pkFMgzJZJTImER-wLjXw,243
seqnado/workflow/scripts/mcc_split_reads_aligned_to_viewpoints.py,sha256=bJ3mP9-HxkJM-74_CrmZmRPUquu5pcpeU_kFcWNe0_M,105
seqnado/workflow/scripts/methylation_conversion.py,sha256=gwl_9erqnlEyXrgXrMwdS4vlMVBgARvkNW5mYA3Th0c,5906
seqnado/workflow/scripts/produce_data_processing_protocol.py,sha256=bt7DT8xo9WEyxbsZvzfRAFeYl_eDkaf4wETUKF-DElk,48134
seqnado/workflow/scripts/remove_blacklist.py,sha256=72VINE0zG_VX6Y8af5cMSOTLQblgJz79JxtAlWMCzjk,708
seqnado/workflow/scripts/run_plotnado.py,sha256=CN8VY3ZvwUkjdXskeglUQ4cGDfNN5ORgDyUhF1AeCRA,8420
seqnado/workflow/scripts/tile_genome.py,sha256=1STJYjpcV1finxmkFk0j5GhN26Z9VRoIReX19VsdUNk,406
