bin/rf-combine
bin/rf-compare
bin/rf-correlate
bin/rf-count
bin/rf-count-genome
bin/rf-duplex
bin/rf-eval
bin/rf-fold
bin/rf-index
bin/rf-jackknife
bin/rf-json2rc
bin/rf-map
bin/rf-mmtools
bin/rf-modcall
bin/rf-motifdiscovery
bin/rf-mutate
bin/rf-norm
bin/rf-normfactor
bin/rf-peakcall
bin/rf-rctools
bin/rf-structextract
bin/rf-wiggle
share/rnaframework/lib/Align/Alignment.pm
share/rnaframework/lib/Align/SmithWaterman.pm
share/rnaframework/lib/Cluster/Kmeans.pm
share/rnaframework/lib/Core/Base.pm
share/rnaframework/lib/Core/Mathematics.pm
share/rnaframework/lib/Core/Process.pm
share/rnaframework/lib/Core/Process/Queue.pm
share/rnaframework/lib/Core/Statistics.pm
share/rnaframework/lib/Core/Utils.pm
share/rnaframework/lib/Data/IO.pm
share/rnaframework/lib/Data/IO/Sequence.pm
share/rnaframework/lib/Data/IO/Sequence/CT.pm
share/rnaframework/lib/Data/IO/Sequence/Fasta.pm
share/rnaframework/lib/Data/IO/Sequence/Vienna.pm
share/rnaframework/lib/Data/IO/XML.pm
share/rnaframework/lib/Data/Sequence.pm
share/rnaframework/lib/Data/Sequence/Structure.pm
share/rnaframework/lib/Data/Sequence/Structure/Helix.pm
share/rnaframework/lib/Data/Sequence/Utils.pm
share/rnaframework/lib/Data/XML.pm
share/rnaframework/lib/Data/XML/Tree.pm
share/rnaframework/lib/Graphics/Chart.pm
share/rnaframework/lib/Graphics/Chart/Arcs.pm
share/rnaframework/lib/Graphics/Chart/Area.pm
share/rnaframework/lib/Graphics/Chart/Barplot.pm
share/rnaframework/lib/Graphics/Chart/Boxplot.pm
share/rnaframework/lib/Graphics/Chart/Density.pm
share/rnaframework/lib/Graphics/Chart/Heatmap.pm
share/rnaframework/lib/Graphics/Chart/Linedot.pm
share/rnaframework/lib/Graphics/Chart/Step.pm
share/rnaframework/lib/Graphics/Image.pm
share/rnaframework/lib/Interface/Aligner/STAR.pm
share/rnaframework/lib/Interface/Generic.pm
share/rnaframework/lib/Interface/Math/R.pm
share/rnaframework/lib/Interface/ViennaRNA.pm
share/rnaframework/lib/Net/DB/MySQL.pm
share/rnaframework/lib/RF/Config.pm
share/rnaframework/lib/RF/Data/IO/MM.pm
share/rnaframework/lib/RF/Data/IO/NRC.pm
share/rnaframework/lib/RF/Data/IO/RC.pm
share/rnaframework/lib/RF/Data/IO/XML.pm
share/rnaframework/lib/RF/Data/NRC.pm
share/rnaframework/lib/RF/Data/RC.pm
share/rnaframework/lib/RF/Utils.pm
share/rnaframework/lib/RNA/Utils.pm
share/rnaframework/lib/Term/Constants.pm
share/rnaframework/lib/Term/Progress.pm
share/rnaframework/lib/Term/Progress/Multiple.pm
share/rnaframework/lib/Term/Table.pm
share/rnaframework/lib/Term/Utils.pm
share/rnaframework/rf-combine
share/rnaframework/rf-compare
share/rnaframework/rf-correlate
share/rnaframework/rf-count
share/rnaframework/rf-count-genome
share/rnaframework/rf-duplex
share/rnaframework/rf-eval
share/rnaframework/rf-fold
share/rnaframework/rf-index
share/rnaframework/rf-jackknife
share/rnaframework/rf-json2rc
share/rnaframework/rf-map
share/rnaframework/rf-mmtools
share/rnaframework/rf-modcall
share/rnaframework/rf-motifdiscovery
share/rnaframework/rf-mutate
share/rnaframework/rf-norm
share/rnaframework/rf-normfactor
share/rnaframework/rf-peakcall
share/rnaframework/rf-rctools
share/rnaframework/rf-structextract
share/rnaframework/rf-wiggle
