Regularized (or Sparse) Generalized Canonical Correlation Analysis (R/SGCCA) for multi-block data analysis


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Documentation for package ‘RGCCA’ version 3.0.0

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RGCCA-package Regularized (or Sparse) Generalized Canonical Correlation Analysis (R/SGCCA) for multi-block data analysis
bootstrap Bootstrap confidence intervals and p-values
ECSI European Customer Satisfaction Index
get_bootstrap Extract statistics from a fitted bootstrap object
load_blocks Create a list of matrix from loading files corresponding to blocks
load_response Create a matrix corresponding to the response
plot.bootstrap Plot a fitted bootstrap object
plot.cval Plot cross-validation
plot.permutation Plot fitted rgcca permutation object
plot.predict plot.predict
plot.rgcca Plot for RGCCA
plot2D Plot RGCCA components in a bi-dimensional space
plot_ave Histogram of Average Variance Explained
plot_bootstrap_1D Plot a fitted bootstrap object in 1D
plot_bootstrap_2D Plot a bootstrap in 2D
plot_histogram Histogram settings
plot_ind Plot the two components of a RGCCA
plot_network Plot the connection between blocks
plot_network2 Plot the connection between blocks (dynamic plot)
plot_permut_2D Plot permutation in 2D
plot_var_1D Barplot of a fingerprint
plot_var_2D Plot of variables space
print.bootstrap Print bootstrap
print.cval print.cval
print.permutation Print a fitted rgcca_permutation object
print.rgcca Print the call of rgcca results
print_comp Print the variance of a component
RGCCA Regularized (or Sparse) Generalized Canonical Correlation Analysis (R/SGCCA) for multi-block data analysis
rgcca Regularized (or Sparse) Generalized Canonical Correlation Analysis (S/RGCCA)
rgccad Regularized Generalized Canonical Correlation Analysis (RGCCA)
rgccak Internal function for computing the RGCCA parameters (RGCCA block components, outer weight vectors, etc.).
rgcca_cv Tune RGCCA parameters in 'supervised' mode with cross-validation
rgcca_cv_k Cross-validation
rgcca_permutation Tune the S/RGCCA hyper-parameters by permutation
rgcca_predict Predict RGCCA
rgcca_stability Stability selection for SGCCA
Russett Russett data
save_plot Save a ggplot object
select_analysis Define the parameters associated with each multi-block component method of the literature.
set_connection Create either a superblock design matrix (if superblock = TRUE), or a supervised design matrix (if response != NULL) or a fully connected design matrix (if response == NULL and superblock == FALSE)
sgcca Variable Selection For Generalized Canonical Correlation Analysis (SGCCA)
sgccak Internal function for computing the SGCCA parameters (SGCCA block components, outer weight vectors etc.)