Metadata-Version: 2.4
Name: refgenie
Version: 0.13.0
Summary: Refgenie creates a standardized folder structure for reference genome files and indexes
Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk
License-Expression: BSD-2-Clause
Project-URL: Homepage, https://refgenie.databio.org
Keywords: bioinformatics,sequencing,ngs,reference genome
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: logmuse>=0.2.6
Requires-Dist: piper>=0.15.0
Requires-Dist: pyfaidx>=0.5.5.2
Requires-Dist: refgenconf>=0.13.0
Requires-Dist: rich>=9.0.1
Requires-Dist: ubiquerg>=0.9.0
Requires-Dist: yacman>=0.9.5
Provides-Extra: test
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Provides-Extra: integration
Requires-Dist: pytest; extra == "integration"
Requires-Dist: fastapi; extra == "integration"
Requires-Dist: uvicorn; extra == "integration"
Requires-Dist: httpx; extra == "integration"
Dynamic: license-file

[![Build package](https://github.com/refgenie/refgenie/workflows/Build%20package/badge.svg)](https://github.com/refgenie/refgenie/actions?query=workflow%3A%22Build+package%22)
[![Test refgenie CLI](https://github.com/refgenie/refgenie/workflows/Test%20refgenie%20CLI/badge.svg)](https://github.com/refgenie/refgenie/actions?query=workflow%3A%22Test+refgenie+CLI%22)
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/refgenie/README.html)

<img src="https://raw.githubusercontent.com/databio/refgenie/master/docs/img/refgenie_logo.svg?sanitize=true" alt="Refgenie" height="70"/><br>

A standardized reference genome resource manager. See the [documentation](http://refgenie.databio.org).
