Processing & Analysis of UMI-4C Contact Profiles.

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Documentation for package ‘umi4cPackage’ version 0.0.0.9000

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get_param Get params from saved var
get_param_list Get params from saved var
init_params Read params from files
p4cBuildRequirements Build the required genomic datasets.
p4cCreate4CseqTrack Import fastq files to a genomic track.
p4cDumpConfFiles Dump config files templates.
p4cExportBedGraph Export bedGraph
p4cIntervalsMean Compare contacts intensities between two profiles
p4cLoadConfFiles Load all the config files required for the package.
p4cNewProfile Create a new p4cProfile object.
plot.p4cProfile Plot 4C nearcis profile.
plotCompProf Plot 4C nearcis profile.
plotSingleProf Plot 4C nearcis profile.