scPred - accurate supervised method for cell-type classification from single-cell RNA-seq data


[Up] [Top]

Documentation for package ‘scPred’ version 1.9.0

Help Pages

.plot_probabilities Plot training probabilities
crossTab Gets contingency table
crossTab-method Gets contingency table
getFeatureSpace Get discriminant feature space
get_classifiers Get classification models
get_classifiers-method Get classification models
get_classifiers-method Get classification models
get_metadata Get metadata from scPred object
get_metadata-method Get metadata from scPred object
get_metadata-method Get metadata from scPred object
get_probabilities Get training probabilities
get_probabilities-method Get training probabilities
get_probabilities-method Get training probabilities
get_scpred Get scPred object
get_scpred-method Get scPred object
pbmc_1 A random sample of PBMCs from individual 1
pbmc_2 A random sample of PBMCs from individual 2
plot_probabilities Plot training probabilities
plot_probabilities-method Plot training probabilities
plot_probabilities-method Plot training probabilities
print.scPred show
scPred Definition of 'scPred' class
scPred-class Definition of 'scPred' class
scPredict Predict cell classes from a new dataset using a trained model
show-method show
trainModel Train a prediction model