R front-end for TASSEL

Documentation for package ‘rTASSEL’ version 0.9.8

assocModelFitter	R interface for TASSEL's association methods
distanceMatrix	Create a TASSEL distance matrix
distanceToRMatrix	Convert TASSEL distance matrix object to an R matrix class
filterGenotypeTableSites	Filter genotype table by sites
filterGenotypeTableTaxa	Filter genotype table by taxa
getPhenotypeDF	Get an R/'tibble' phenotype data frame from TASSEL object
getSumExpFromGenotypeTable	Create Summarized Experiment from a TASSEL Genotype Table
kinshipMatrix	Create a TASSEL kinship matrix
kinshipToRMatrix	Convert TASSEL kinship matrix object to an R matrix class
manhattanPlot	Create Manhattan plot from rTASSEL association output
readGenotypePhenotype	Wrapper function of TasselGenotypePhenotype class for GenotypePhenotype combined data
readGenotypeTableFromPath	Wrapper function of TasselGenotypePhenotype class for genotype data
readPhenotypeFromDataFrame	Wrapper function of TasselGenotypePhenotype class for phenotype data from an R data frame
readPhenotypeFromPath	Wrapper function of TasselGenotypePhenotype class for phenotype data from a path.
show-method	TasselGenotypePhenotype Class
startLogger	Start TASSEL logging information
TasselGenotypePhenotype-class	TasselGenotypePhenotype Class