qiime2R
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Documentation for package ‘qiime2R’ version 0.99.20
Help Pages
| is_q2metadata | checks if metadata is in qiime2 (.tsv) |
| parse_ordination | Parse an imported q2 ordination text file |
| parse_taxonomy | Parse Q2 taxonomy |
| print_provenance | plot the provenance of a QIIME2 artifact (.qza) |
| qza_to_phyloseq | generates a phyloseq object from .qza artifacts |
| read_q2metadata | read qiime2 metadata (.tsv) |
| read_qza | read qiime2 artifacts (.qza) |
| theme_q2r | A ggplot2 theme for publication-style figures |
| write_q2manifest | Generates a read manifest for importing sequencing data into qiime2 |