Pipette Biological Data In and Out of R

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Documentation for package ‘pipette’ version 0.8.0

• DESCRIPTION file.

Help Pages

as.data.frame	Coerce object to data.frame
as.data.frame-method	Coerce object to data.frame
as.data.table	Coerce object to a data.table
as.data.table.DataFrame	Coerce object to a data.table
as.data.table.GenomicRanges	Coerce object to a data.table
as.data.table.IntegerRanges	Coerce object to a data.table
as.DataFrame	Coerce object to S4 DataFrame
as.DataFrame-method	Coerce object to S4 DataFrame
assignAndSaveData	Assign and save data
as_tibble	Coerce an object to a tibble
as_tibble.DataFrame	Coerce an object to a tibble
as_tibble.GenomicRanges	Coerce an object to a tibble
as_tibble.IntegerRanges	Coerce an object to a tibble
atomize	Atomize
atomize-method	Atomize
BcbioCountsFile-class	File extension classes
cacheURL	Download and cache a file using BiocFileCache
checksums	Generate checksum from file
coerce	Coercion methods
coerce-method	Coercion methods
CSVFile-class	File extension classes
decode	Decode data that uses run-length encoding
decode-method	Decode data that uses run-length encoding
DelimFile-class	File extension classes
droplevels	Drop unused levels from factors
droplevels-method	Drop unused levels from factors
encode	Encode using run-length encoding
encode-method	Encode using run-length encoding
ExcelFile-class	File extension classes
export	Export
export-method	Export
factorize	Factorize
factorize-method	Factorize
FASTAFile-class	File extension classes
FASTQFile-class	File extension classes
getJSON	Get JSON from an API
getURLDirList	Get remote URL directory listing
GMTFile-class	File extension classes
GMXFile-class	File extension classes
GRPFile-class	File extension classes
import	Import
import-method	Import
JSONFile-class	File extension classes
LinesFile-class	File extension classes
loadData	Load data
loadDataAsName	Load data as name
loadRemoteData	Load remote data
matchRownameColumn	Match row name column
matchRownameColumn-method	Match row name column
md5	Generate checksum from file
metadata2	Metadata
metadata2-method	Metadata
metadata2<-	Metadata
metadata2<--method	Metadata
MTXFile-class	File extension classes
naStrings	NA strings
PipetteFile-class	File extension classes
PZFXFile-class	File extension classes
RDataFile-class	File extension classes
RDSFile-class	File extension classes
removeNA	Remove rows and columns containing only NA values
removeNA-method	Remove rows and columns containing only NA values
RioHandoffFile-class	File extension classes
RtracklayerHandoffFile-class	File extension classes
sanitizeNA	Sanitize NA values
sanitizeNA-method	Sanitize NA values
sanitizePercent	Sanitize percentage
sanitizePercent-method	Sanitize percentage
saveData	Save data
sha256	Generate checksum from file
TableFile-class	File extension classes
transmit	Transmit files from a remote FTP server
TSVFile-class	File extension classes
YAMLFile-class	File extension classes