Pipette Biological Data In and Out of R

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Documentation for package ‘pipette’ version 0.6.0

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as.data.frame Coercion methods
as.data.frame-method Coercion methods
as.data.table Coercion methods
as.data.table.DataFrame Coercion methods
as.data.table.GenomicRanges Coercion methods
as.data.table.IRanges Coercion methods
as.DataFrame Coercion methods
as.DataFrame-method Coercion methods
assignAndSaveData Assign and save data
as_tibble Coercion methods
as_tibble.DataFrame Coercion methods
as_tibble.GenomicRanges Coercion methods
as_tibble.IRanges Coercion methods
atomize Atomize
atomize-method Atomize
BcbioCountsFile-class File extension classes
cacheURL Download and cache a file using BiocFileCache
checksums Generate checksum from file
coerce Coercion methods
coerce-method Coercion methods
CSVFile-class File extension classes
decode Decode column data that uses run-length encoding
decode-method Decode column data that uses run-length encoding
DelimFile-class File extension classes
droplevels Drop unused levels from factors
droplevels-method Drop unused levels from factors
encode Encode using run-length encoding
encode-method Encode using run-length encoding
ExcelFile-class File extension classes
export Export
export-method Export
factorize Factorize
factorize-method Factorize
getJSON Get JSON from an API
getURLDirList Get remote URL directory listing
GMTFile-class File extension classes
GMXFile-class File extension classes
GRPFile-class File extension classes
import Import
import-method Import
JSONFile-class File extension classes
LinesFile-class File extension classes
loadData Load data
loadDataAsName Load data as name
loadRemoteData Load remote data
localOrRemoteFile Dynamically handle a local or remote file path
matchRownameColumn Match row name column
matchRownameColumn-method Match row name column
md5 Generate checksum from file
metadata2 Metadata
metadata2-method Metadata
metadata2<- Metadata
metadata2<--method Metadata
MTXFile-class File extension classes
naStrings NA strings
PipetteFile-class File extension classes
PZFXFile-class File extension classes
RDataFile-class File extension classes
RDSFile-class File extension classes
removeNA Remove rows and columns containing only NA values
removeNA-method Remove rows and columns containing only NA values
RioFile-class File extension classes
RtracklayerFile-class File extension classes
sanitizeNA Sanitize NA values
sanitizeNA-method Sanitize NA values
sanitizePercent Sanitize percentage
sanitizePercent-method Sanitize percentage
saveData Save data
sha256 Generate checksum from file
TableFile-class File extension classes
transmit Transmit files from a remote FTP server
TSVFile-class File extension classes
YAMLFile-class File extension classes