Network Construction and Comparison for Microbiome Data

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Documentation for package ‘NetCoMi’ version 1.2.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

calcGCD	Graphlet Correlation Distance (GCD)
calcGCM	Graphlet Correlation Matrix (GCM)
cclasso	CCLasso: Correlation inference of Composition data through Lasso method
colToTransp	Adding transparency to a color
createAssoPerm	Create and store association matrices for permuted data
diffnet	Constructing Differential Networks for Microbiome Data
editLabels	Edit labels
gcoda	gCoda: conditional dependence network inference for compositional data
installNetCoMiPacks	Install all packages used within NetCoMi
multAdjust	Multiple testing adjustment
netAnalyze	Microbiome Network Analysis
netCompare	Group Comparison of Network Properties
netConstruct	Constructing Networks for Microbiome Data
plot	Plot Method for microNetProps Objects
plot.diffnet	Plot method for objects of class diffnet
plot.microNetProps	Plot Method for microNetProps Objects
plotHeat	Create a heatmap with p-values
print.GCD	Print method for GCD objects
print.summary.microNetComp	Summary Method for Objects of Class microNetComp
print.summary.microNetProps	Summary Method for Objects of Class microNetProps
renameTaxa	Rename taxa
summary.microNetComp	Summary Method for Objects of Class microNetComp
summary.microNetProps	Summary Method for Objects of Class microNetProps
testGCM	Test GCM(s) for statistical significance