Package: NetCoMi
Type: Package
Title: Network Construction and Comparison for Microbiome Data
Version: 1.2.0
Date: 2025-03-14
Authors@R: c(
    person("Stefanie", "Peschel", email = "stefpeschel@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7936-7627")),
    person("Christian L.", "Müller", role = "ctb", comment = c(ORCID = "0000-0002-3821-7083")),
    person("Anne-Laure", "Boulesteix", role = "ctb", comment = c(ORCID = "0000-0002-2729-0947")),
    person("Erika", "von Mutius", role = "ctb", comment = c(ORCID = "0000-0002-8893-4515")),
    person("Martin", "Depner", role = "ctb")
  )
Description: NetCoMi offers functions for constructing, analyzing, and comparing 
    microbial association networks as well as dissimilarity-based networks for 
    microbial compositional data. It also includes functionality for 
    constructing differential association networks.
License: GPL-3 + file LICENSE
URL: https://netcomi.de, https://github.com/stefpeschel/NetCoMi
BugReports: https://github.com/stefpeschel/NetCoMi/issues
Depends: SpiecEasi (>= 1.1.1)
biocViews:
Imports: Biobase, corrplot, doSNOW, fdrtool, filematrix, foreach,
        graphics, grDevices, gtools, huge, igraph, lifecycle, MASS,
        Matrix, mia, mixedCCA (>= 1.6.2), orca, phyloseq, pulsar,
        qgraph, RColorBrewer, Rdpack, rlang, SPRING, stats,
        SummarizedExperiment, utils, vegan, WGCNA
Remotes: github::zdk123/SpiecEasi, github::GraceYoon/SPRING,
        github::vmikk/metagMisc, github::tpq/propr,
        github::HCBravoLab/metagenomeSeq
Suggests: BiocManager, cccd, ccrepe, DESeq2, devtools, discordant,
        knitr, LaplacesDemon, limma, metagenomeSeq, metagMisc, propr,
        rmarkdown, testthat, zCompositions
RdMacros: Rdpack
Encoding: UTF-8
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Author: Stefanie Peschel [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7936-7627>),
  Christian L. Müller [ctb] (ORCID:
    <https://orcid.org/0000-0002-3821-7083>),
  Anne-Laure Boulesteix [ctb] (ORCID:
    <https://orcid.org/0000-0002-2729-0947>),
  Erika von Mutius [ctb] (ORCID: <https://orcid.org/0000-0002-8893-4515>),
  Martin Depner [ctb]
Maintainer: Stefanie Peschel <stefpeschel@gmail.com>
Built: R 4.5.3; ; 2026-04-25 07:01:23 UTC; unix
