Network Construction and Comparison for Microbiome Data

Documentation for package ‘NetCoMi’ version 1.0.3

NetCoMi-package	NetCoMi: Network Comparison for Microbial Compositional Data
boottest	Bootstrap Procedure for Testing Statistical Significance of Correlation Values
calc_association	Compute associations between taxa
calc_props	Calculate network properties
cclasso	CCLasso: Correlation inference of Composition data through Lasso method
colToTransp	Adding transparency to a color
createAssoPerm	Create and store association matrices for permuted data
diffnet	Constructing Differential Networks for Microbiome Data
gcoda	gCoda: conditional dependence network inference for compositional data
get_vec_names	Function for Generating Vector Names
installNetCoMiPacks	Install all packages used within NetCoMi
multAdjust	Multiple testing adjustment
netAnalyze	Microbiome Network Analysis
netCompare	Group Comparison of Network Properties
netConstruct	Constructing Networks for Microbiome Data
permtest_diff_asso	Permutation Tests for Determining Differential Associations
plot	Plot Method for microNetProps Objects
plot.diffnet	Plot method for objects of class diffnet
plot.microNetProps	Plot Method for microNetProps Objects
print.summary.microNetComp	Summary Method for Objects of Class netProps
print.summary.microNetProps	Summary Method for Objects of Class microNetProps
springLayout	Generate a Spring Embedded Layout
summary.microNetComp	Summary Method for Objects of Class netProps
summary.microNetProps	Summary Method for Objects of Class microNetProps