assignSigPerMut	assignSigPerMut
cosSim	cosSim
cosSim.data.frame	cosSim
cosSim.default	cosSim
cosSim.matrix	cosSim
DBS_SIGNATURE_PROFILES	DBS_SIGNATURE_PROFILES
detSmnvType	detSmnvType
extractSigsDbs	extractSigsDbs
extractSigsIndel	extractSigsIndel
extractSigsIndelChord	extractSigsIndel
extractSigsIndelPcawg	extractSigsIndel
extractSigsSnv	extractSigsSnv
extractSigsSv	extractSigsSv
fitToSignatures	fitToSignatures
fitToSignaturesFast	fitToSignatures
fitToSignaturesFastStrict	fitToSignatures
fitToSignaturesStrict	fitToSignatures
getContextsSv	getContextsSv
getInfoValues	getInfoValues
indelSeqFlanksStartEnd	indelSeqFlanksStartEnd
INDEL_SIGNATURE_PROFILES	INDEL_SIGNATURE_PROFILES
lsqnonneg	lsqnonneg
lsqnonneg.data.frame	lsqnonneg
lsqnonneg.default	lsqnonneg
lsqnonneg.matrix	lsqnonneg
nBasesMH	nBasesMH
nCopiesAlongFlank	nCopiesAlongFlank
plotContexts	plotContexts
readSigsAsDf	readSigsAsDf
readVcfFields	readVcfFields
SBS_SIGNATURE_PROFILES_V2	SBS_SIGNATURE_PROFILES_V2
SBS_SIGNATURE_PROFILES_V3	SBS_SIGNATURE_PROFILES_V3
splitDfRegex	splitDfRegex
subsetSmnvs	subsetSmnvs
SV_SIGNATURE_PROFILES	SV_SIGNATURE_PROFILES
transformContexts	transformContexts
variantsFromVcf	variantsFromVcf
