LINX Result Reporter


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Documentation for package ‘linxreport’ version 1.0.0

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date_log Print current timestamp for logging
dt_table DataTable Table
linx_breakend_process Process LINX Breakend File
linx_breakend_read Read LINX Breakend File
linx_clusters_process Process LINX Clusters File
linx_clusters_read Read LINX Clusters File
linx_drivercatalog_process Process LINX Driver Catalog File
linx_drivercatalog_read Read LINX Driver Catalog File
linx_drivers_process Process LINX Drivers File
linx_drivers_read Read LINX Drivers File
linx_fusion_process Process LINX Fusion File
linx_fusion_read Read LINX Fusion File
linx_links_process Process LINX Links File
linx_links_read Read LINX Links File
linx_path_plot_chr Chromosome Plot Paths
linx_path_plot_cluster Cluster Plot Paths
linx_rmd Generate LINX HTML Report
linx_svs_process Process LINX SVS File
linx_svs_read Read LINX SVS File
linx_viscopynumber_read Read LINX VisCopyNumber File
linx_visfusion_read Read LINX VisFusion File
linx_visgeneexon_read Read LINX VisGeneExon File
linx_visproteindomain_read Read LINX VisProteinDomain File
linx_vissegments_read Read LINX VisSegments File
linx_vissvdata_read Read LINX VisSvData File
mixedrank Order Mixed Vectors
mkdir Create directory
session_info_tbls Session Information Tables