ddiR: The Omics Discovery Index R package

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Documentation for package ‘ddiR’ version 0.0.3

• DESCRIPTION file.

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database-method	Returns an acession id
database-method	Returns an acession id
dataset.id-method	Returns an acession id
dataset.id-method	Returns an acession id
dataset.to.dataframe	Returns a data frame from a DatasetDetail list
DatasetDetail-class	DatasetDetail provides the information about an specific Facet in the API
DatasetResult-class	DatasetResult, provides a list of datasets for an specific query
DatasetSimilars-class	DatasetSimilars, This class contains the information of one particuar dataset in OmicsDI
DatasetSummary-class	DatasetSummary, This class contains the information of one particuar dataset in OmicsDI
DictWord-class	DictWord, This class contains the information of a list of Dictionary Words
Facet-class	Facet provides the information about an specific Facet in the API
FacetValue-class	FacetValue provides the information about an specific Facet in the API
from.json.BiologicalSimilars	from.json.BiologicalSimilars
from.json.BiologicalSimilarsList	from.json.BiologicalSimilarsList
from.json.DatasetDetail	from.json.DatasetDetail This function converts a json DatasetDetail to a DatasetDetail
from.json.DataSetResult	Returns a DatasetResult instance from a JSON string representation
from.json.DatasetResults	from.json.DatasetResults
from.json.DatasetSummary	from.json.DatasetSummary
from.json.Facet	from.json.Facet
from.json.FacetValue	from.json.FacetValue
from.json.LabMember	from.json.LabMember
from.json.Organism	from.json.Organism
from.json.Protocol	from.json.Protocol This function converts a json Protocol object to a Protocol object
get.BiologicalSimilars	get.BiologicalSimilars Returns a Biological Molecules similarity for a Dataset
get.dataset.link-method	Returns the dataset full link
get.dataset.name-method	Returns the original dataset title
get.dataset.omics-method	Returns the type of omics experiment (e.g. Proteomics, Genomics)
get.dataset.tissues-method	Returns tissues information described in the dataset
get.DatasetDetail	Returns a DatasetDetail from OmicsDI
get.description-method	Returns the dataset description
get.diseases-method	Returns the diseases under study
get.instruments-method	Returns the instruments used to generate the dataset
get.MetadataSimilars	get.MetadataSimilars
get.organisms-method	Returns the organisms described in the dataset
get.publication.date-method	Returns the dataset publication date
get.publication.ids-method	Returns the publications IDs associated to the dataset
Item-class	Item, This class contains the information of an Item in the Dictonary
LabMember-class	LabMember retrieve the information of a lab member including affilation, name, etc
list.to.data.frame	Returns a data frame from a list of objects
Organism-class	Organism return an organism entity including its name and accession
Protocol-class	Protocol retirve the information of a Protocol used in the experiment
PublicationDetail-class	PublicationDetail, This class contains a Publication Record
PublicationResult-class	PiublicationResult, This class contains a list of publication for specific Query
search.DatasetsSummary	search.DatasetsSummary
Similar-class	Similar, This class contains the information of one particuar dataset in OmicsDI
StatRecord-class	StatRecord, This class contains the information of statistics records
Term-class	Term, This class contains the information of a Term