A Consensus Approach To Tumour Microenvironment Cell Estimation

Documentation for package ‘ConsensusTME’ version 0.0.1.9000

ConsensusTME-package	ConsensusTME: A package for estimation of cell type abundance.
buildConsensusGenes	Build Consensus Gene Supersets 'buildConsensusGenes' Combines pre-processed signatures and filters to create curated gene sets.
cancerAll	Consensus TME Cancer Types
consensusGeneSets	Consensus TME Gene Sets
ConsensusTME	ConsensusTME: A package for estimation of cell type abundance.
consensusTMEAnalysis	Run ConsensusTME Cell Type Estimation 'consensusTMEAnalysis' takes bulk tumour gene expression data and returns cell type specific enrichment scores for each sample
geneSetEnrichment	Carry out Gene Set Enrichment Analysis
matchGeneSigs	Combine Existing Signatures Ensuring Consistant Nomenclature
methodSignatures	Raw Method Signatures and Filter Data