Reconstruction of full length circular RNA sequences

Documentation for package ‘circRNAFull’ version 0.1.0

Chimeric.out.junction	A simple junction file obtained from the chimeric alignment produced by STAR
CIRCexplorer_output	Sample output of the circRNA prediction tool CIRCexplorer
circle_ID	A sample file containing the circle ids, transcript name and spanning reads of circRNAs.
exon_coordinate	A sample text file containing the exon cordinates obtained from reference genome annotation file.
exon_count	A sample exon count file of circRNAs.
exon_count_after_skipping_exon	A sample exon count file after deleting skip exon.
extract_circle_ids	Extracting transcript name and spanning reads for circRNAs
Extract_exon	Extracting exon for the circRNAs
extract_exon_after_delete_skip_exon	Extracting exon after deleting skip exon
extract_reads_from_bam	Extracting individual alignment file for each circRNA from chimeric alignment bam file
extract_sequence	Reconstruction of full length circRNA sequences
skip_exon	A sample skip exon file.
skip_exon_detection	Detecting skip exon