Segmentation Methods for Array CGH Analysis

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Documentation for package ‘cghseg’ version 1.0.5

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alpha<- Replace slot alpha
alpha<--method Class "CGHoptions"
alpha<--methods Replace slot alpha
beta<- Replace slot beta
beta<--method Class "CGHoptions"
beta<--methods Replace slot beta
calling<- Replace slot calling
calling<--method Class "CGHoptions"
calling<--methods Replace slot calling
CGHdata-class Class "CGHdata"
CGHoptions-class Class "CGHoptions"
CGHresults-class Class "CGHresults"
GCnorm<- Replace slot GCnorm
GCnorm<--method Class "CGHoptions"
GCnorm<--methods Replace slot GCnorm
getbgoutliers getbgoutliers
getbgoutliers-method Class "CGHresults"
getbgoutliers-methods getbgoutliers
getbp Breakpoints frequencies
getbp-method Class "CGHresults"
getbp-methods Breakpoints frequencies
getlevels Levels frequency
getlevels-method Class "CGHresults"
getlevels-methods Levels frequency
getmultiKmax Determining the maximum number of segments for joint segmentation
getmultiKmax-method Class "CGHdata"
getmultiKmax-methods Determining the maximum number of segments for joint segmentation
getprobebias-method Class "CGHresults"
getsegprofiles getsegprofiles
getsegprofiles-method Class "CGHresults"
getsegprofiles-methods getsegprofiles
getuniKmax Maximum number of segments per profile
getuniKmax-method Class "CGHdata"
getuniKmax-methods Maximum number of segments per profile
initialize-method Class "CGHdata"
initialize-method Class "CGHresults"
itermax<- Replace slot itermax
itermax<--method Class "CGHoptions"
itermax<--methods Replace slot itermax
multiseg Joint segmentation of multiple CGH profiles
multiseg-method Class "CGHdata"
multiseg-methods Joint segmentation of multiple CGH profiles
nblevels<- Replace slot nblevels
nblevels<--method Class "CGHoptions"
nblevels<--methods Replace slot nblevels
nbprocs<- Replace slot nbprocs
nbprocs<--method Class "CGHoptions"
nbprocs<--methods Replace slot nbprocs
print-method Class "CGHdata"
print-method Class "CGHoptions"
segmeanCO segmentation CGH profiles
select<- Replace slot select
select<--method Class "CGHoptions"
select<--methods Replace slot select
show-method Class "CGHdata"
show-method Class "CGHoptions"
simulprofiles simulprofiles
summary-method Class "CGHdata"
summary-method Class "CGHresults"
uniseg Segmentation of univariate CGH profiles
uniseg-method Class "CGHdata"
uniseg-methods Segmentation of univariate CGH profiles
wavenorm<- Replace slot wavenorm
wavenorm<--method Class "CGHoptions"
wavenorm<--methods Replace slot wavenorm
[-method Class "CGHdata"
[-method Class "CGHoptions"
[-method Class "CGHresults"