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| acid_coord_flip | Flip coordinates |
| acid_geom_abline | ggplot2 geometric objects |
| acid_geom_bar | ggplot2 geometric objects |
| acid_geom_label | ggplot2 geometric objects |
| acid_geom_label_average | ggplot2 geometric objects |
| acid_geom_label_repel | ggplot2 geometric objects |
| acid_pretty_breaks | Pretty breaks that resemble the base plotting engine |
| acid_scale_y_continuous_nopad | Remove Y axis padding |
| acid_theme_dark | ggplot2 themes |
| acid_theme_light | ggplot2 themes |
| barcodeRanksPerSample | Barcode ranks per sample |
| barcodeRanksPerSample-method | Barcode ranks per sample |
| blueYellow | Hex color gradient generator |
| genderMarkers | Sexually dimorphic gender marker genes |
| geoms | ggplot2 geometric objects |
| gradient | Hex color gradient generator |
| plotBarcodeRanks | Plot barcode ranks |
| plotBarcodeRanks-method | Plot barcode ranks |
| plotCellCounts | Plot cell counts |
| plotCellCounts-method | Plot cell counts |
| plotCorrelationHeatmap | Correlation heatmap |
| plotCorrelationHeatmap-method | Correlation heatmap |
| plotCounts | Plot counts |
| plotCounts-method | Plot counts |
| plotCountsCorrelation | Plot counts correlation |
| plotCountsCorrelation-method | Plot counts correlation |
| plotCountsCorrelationHeatmap | Plot counts correlation heatmap |
| plotCountsCorrelationHeatmap-method | Plot counts correlation heatmap |
| plotCountsPerBiotype | Plot counts per biotype |
| plotCountsPerBiotype-method | Plot counts per biotype |
| plotCountsPerBroadClass | Plot counts per broad class definition |
| plotCountsPerBroadClass-method | Plot counts per broad class definition |
| plotCountsPerCell | Plot counts per cell |
| plotCountsPerCell-method | Plot counts per cell |
| plotCountsPerFeature | Plot counts per feature |
| plotCountsPerFeature-method | Plot counts per feature |
| plotCountsVsFeatures | Plot count and feature correlation |
| plotCountsVsFeatures-method | Plot count and feature correlation |
| plotFeaturesDetected | Plot features detected |
| plotFeaturesDetected-method | Plot features detected |
| plotFeaturesPerCell | Plot features per cell |
| plotFeaturesPerCell-method | Plot features per cell |
| plotGenderMarkers | Plot sexually dimorphic gender marker genes |
| plotGenderMarkers-method | Plot sexually dimorphic gender marker genes |
| plotHeatmap | Heatmap |
| plotHeatmap-method | Heatmap |
| plotMitoRatio | Plot mitochondrial transcript abundance |
| plotMitoRatio-method | Plot mitochondrial transcript abundance |
| plotMitoVsCoding | Plot mitochondrial vs. coding counts |
| plotMitoVsCoding-method | Plot mitochondrial vs. coding counts |
| plotNovelty | Plot novelty score |
| plotNovelty-method | Plot novelty score |
| plotPCA | Principal component analysis plot |
| plotPCA-method | Principal component analysis plot |
| plotQC | Quality control |
| plotQC-method | Quality control |
| plotQuantileHeatmap | Quantile heatmap |
| plotQuantileHeatmap-method | Quantile heatmap |
| plotSums | Plot row or column sums |
| plotSums-method | Plot row or column sums |
| plotTotalCounts | Plot total read counts |
| plotTotalCounts-method | Plot total read counts |
| plotZerosVsDepth | Plot percentage of zeros vs. library depth |
| plotZerosVsDepth-method | Plot percentage of zeros vs. library depth |
| purpleOrange | Hex color gradient generator |
| scale_color_synesthesia_c | Synesthesia color palette |
| scale_color_synesthesia_d | Synesthesia color palette |
| scale_colour_synesthesia_c | Synesthesia color palette |
| scale_colour_synesthesia_d | Synesthesia color palette |
| scale_fill_synesthesia_c | Synesthesia color palette |
| scale_fill_synesthesia_d | Synesthesia color palette |
| synesthesia | Synesthesia color palette |
| synesthesia_pal | Synesthesia color palette |
| themes | ggplot2 themes |
| upset | UpSetR plot |