LTQ-iQuant
To perform a quantification analysis choose the appropriate option from the File
menu.
- New Untrained Quantification
- This sets up a new quantification from a MzXML file and the corresponding Scaffold report file.
- New Trained Quantification
- This also sets up a new quantification but additionally requires a training XML file to be specified. Such a file can be created using the 'New Training' option.
- New Training
- This sets up a new training set for future quantifications from an MzXML file and Scaffold report file with specified expected label proportions.