python-scripts/GMM_screening
python-scripts/METACARP
python-scripts/METACARP_galaxy
site-packages/metacarp-1.0.0.dist-info/INSTALLER
site-packages/metacarp-1.0.0.dist-info/METADATA
site-packages/metacarp-1.0.0.dist-info/RECORD
site-packages/metacarp-1.0.0.dist-info/REQUESTED
site-packages/metacarp-1.0.0.dist-info/WHEEL
site-packages/metacarp-1.0.0.dist-info/direct_url.json
site-packages/metacarp-1.0.0.dist-info/entry_points.txt
site-packages/metacarp-1.0.0.dist-info/licenses/LICENSE
site-packages/metacarp-1.0.0.dist-info/top_level.txt
site-packages/metacarp/__init__.py
site-packages/metacarp/app/__init__.py
site-packages/metacarp/app/command.py
site-packages/metacarp/app/utils/__init__.py
site-packages/metacarp/app/utils/loggingutils.py
site-packages/metacarp/app/utils/reportutils.py
site-packages/metacarp/app/utils/snakemakeutils.py
site-packages/metacarp/app/utils/workflowutils.py
site-packages/metacarp/camel_gene_detection/__init__.py
site-packages/metacarp/camel_gene_detection/app/__init__.py
site-packages/metacarp/camel_gene_detection/app/camel.py
site-packages/metacarp/camel_gene_detection/app/command/__init__.py
site-packages/metacarp/camel_gene_detection/app/command/command.py
site-packages/metacarp/camel_gene_detection/app/components/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/blast/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/blast/blasthitstatistics.py
site-packages/metacarp/camel_gene_detection/app/components/files/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/files/fastqutils.py
site-packages/metacarp/camel_gene_detection/app/components/files/fileutils.py
site-packages/metacarp/camel_gene_detection/app/components/filesystemhelper.py
site-packages/metacarp/camel_gene_detection/app/components/galaxy/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/galaxy/galaxyutils.py
site-packages/metacarp/camel_gene_detection/app/components/genedetection/__init__.py
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site-packages/metacarp/camel_gene_detection/app/components/genedetection/genedetectionkmahit.py
site-packages/metacarp/camel_gene_detection/app/components/genedetection/genedetectionsrst2hit.py
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site-packages/metacarp/camel_gene_detection/app/components/genedetection/mapping.py
site-packages/metacarp/camel_gene_detection/app/components/genedetection/mappingjson.py
site-packages/metacarp/camel_gene_detection/app/components/html/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/html/htmlbase.py
site-packages/metacarp/camel_gene_detection/app/components/html/htmlcitation.py
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site-packages/metacarp/camel_gene_detection/app/components/html/htmlexpandabletable.py
site-packages/metacarp/camel_gene_detection/app/components/html/htmlreport.py
site-packages/metacarp/camel_gene_detection/app/components/html/htmlreportsection.py
site-packages/metacarp/camel_gene_detection/app/components/html/htmltablecell.py
site-packages/metacarp/camel_gene_detection/app/components/html/htmltableformatter.py
site-packages/metacarp/camel_gene_detection/app/components/mainscriptutils.py
site-packages/metacarp/camel_gene_detection/app/components/statisticsutils.py
site-packages/metacarp/camel_gene_detection/app/components/workflows/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/workflows/genedetectionwrapper.py
site-packages/metacarp/camel_gene_detection/app/components/workflows/readtype/__init__.py
site-packages/metacarp/camel_gene_detection/app/components/workflows/readtype/basereadtypehelper.py
site-packages/metacarp/camel_gene_detection/app/components/workflows/readtype/illuminahelper.py
site-packages/metacarp/camel_gene_detection/app/components/workflows/readtype/onthelper.py
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site-packages/metacarp/camel_gene_detection/app/error/snakemakeexecutionerror.py
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site-packages/metacarp/camel_gene_detection/app/io/toolio.py
site-packages/metacarp/camel_gene_detection/app/io/tooliodirectory.py
site-packages/metacarp/camel_gene_detection/app/io/tooliofile.py
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site-packages/metacarp/camel_gene_detection/app/loggers/fileloggerutils.py
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site-packages/metacarp/camel_gene_detection/app/parameter/parameter.py
site-packages/metacarp/camel_gene_detection/app/pipeline/__init__.py
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site-packages/metacarp/camel_gene_detection/app/services/__init__.py
site-packages/metacarp/camel_gene_detection/app/services/basetoolservice.py
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site-packages/metacarp/camel_gene_detection/app/tools/kma/kmagenedetectionhitextractor.yml
site-packages/metacarp/camel_gene_detection/app/tools/kma/kmatypinghitextractor.py
site-packages/metacarp/camel_gene_detection/app/tools/kma/kmatypinghitextractor.yml
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/__init__.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/__init__.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/alignmentextractor.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/alignmentextractor.yml
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/blasthitfiltering.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/blasthitfiltering.yml
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/dbmanager.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/dbmanager.yml
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/htmlreportergenedetection.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/htmlreportergenedetection.yml
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/srst2hitextractor.py
site-packages/metacarp/camel_gene_detection/app/tools/pipelines/genedetection/srst2hitextractor.yml
site-packages/metacarp/camel_gene_detection/app/tools/tool.py
site-packages/metacarp/camel_gene_detection/app/tools/toolpipeable.py
site-packages/metacarp/camel_gene_detection/config/__init__.py
site-packages/metacarp/camel_gene_detection/config/main.yml
site-packages/metacarp/camel_gene_detection/resources/__init__.py
site-packages/metacarp/camel_gene_detection/resources/css/style.css
site-packages/metacarp/camel_gene_detection/resources/fonts/FreeSans.ttf
site-packages/metacarp/camel_gene_detection/resources/fonts/FreeSansBold.ttf
site-packages/metacarp/camel_gene_detection/resources/javascript/__init__.py
site-packages/metacarp/camel_gene_detection/resources/javascript/jquery-3.2.1.min.js
site-packages/metacarp/camel_gene_detection/resources/snakefile/__init__.py
site-packages/metacarp/camel_gene_detection/resources/snakefile/gene_detection.py
site-packages/metacarp/camel_gene_detection/resources/snakefile/gene_detection.smk
site-packages/metacarp/camel_gene_detection/resources/snakefile/gene_detection_blast.smk
site-packages/metacarp/camel_gene_detection/resources/snakefile/gene_detection_kma.smk
site-packages/metacarp/camel_gene_detection/resources/snakefile/gene_detection_srst2.smk
site-packages/metacarp/camel_gene_detection/resources/snakefile/read_simulation.py
site-packages/metacarp/camel_gene_detection/resources/snakefile/read_simulation.smk
site-packages/metacarp/camel_gene_detection/resources/snakefile/trimming.py
site-packages/metacarp/camel_gene_detection/resources/snakefile/trimming_illumina.py
site-packages/metacarp/camel_gene_detection/resources/snakefile/trimming_illumina.smk
site-packages/metacarp/camel_gene_detection/resources/snakefile/trimming_ont.py
site-packages/metacarp/camel_gene_detection/resources/snakefile/trimming_ont.smk
site-packages/metacarp/camel_gene_detection/resources/static/logo-sciensano.png
site-packages/metacarp/camel_gene_detection/scripts/__init__.py
site-packages/metacarp/camel_gene_detection/scripts/genedetection/__init__.py
site-packages/metacarp/camel_gene_detection/scripts/genedetection/maingenedetection.py
site-packages/metacarp/galaxy.py
site-packages/metacarp/resources/DB_GMM/V6/genes-vectors/db_metadata.txt
site-packages/metacarp/resources/DB_GMM/V6/genes-vectors/genes-vectors-clustered_80.fasta
site-packages/metacarp/resources/DB_GMM/V6/genes-vectors/genes-vectors.fasta
site-packages/metacarp/resources/DB_GMM/V6/genes-vectors/mapping_full.json
site-packages/metacarp/resources/DB_GMM/V6/junctions/GMM_junctions-clustered_80.fasta
site-packages/metacarp/resources/DB_GMM/V6/junctions/db_metadata.txt
site-packages/metacarp/resources/DB_GMM/V6/junctions/gmm_junctions.fasta
site-packages/metacarp/resources/DB_GMM/V6/junctions/mapping_full.json
site-packages/metacarp/resources/__init__.py
site-packages/metacarp/resources/allergens.tsv
site-packages/metacarp/resources/citations/Orval_2025-vitamins.json
site-packages/metacarp/resources/confidence_cutoffs.json
site-packages/metacarp/resources/snakefiles/GMM_screening.smk
site-packages/metacarp/resources/snakefiles/__init__.py
site-packages/metacarp/resources/snakefiles/ilmn_rules.smk
site-packages/metacarp/resources/snakefiles/main_workflow.smk
site-packages/metacarp/resources/snakefiles/ont_rules.smk
site-packages/metacarp/resources/style.css
site-packages/metacarp/resources/usual_suspects.tsv
site-packages/metacarp/run_GMM_screening.py
site-packages/metacarp/run_metacarp.py
site-packages/metacarp/version.py
