Assignments Minimum abundance: LCA minimum abundance cutoff:
Rank: Taxonomic rank:
Sample
Sample ID

Analysis status

Pipeline

Basecalled reads


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Plots will appear after the first chunk of reads has been analysed.

Donut
Tree
Treemap
Taxa accumulation - All levels

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Walkout Analysis Taxa

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Accumulation

Taxa accumulation plot.

AMR Table

Antimicrobial resistance analysis table.

Walkout Analysis

Donut plot of taxa identified via AMR walkout analysis.

AMR Hits

Donut plot of AMR hits.