Metadata-Version: 2.4
Name: kleboscope
Version: 1.0.0
Summary: Advanced Klebsiella pneumoniae Genomic Analysis Platform
Home-page: https://github.com/bbeckley-hub/Kleboscope
Author: Brown Beckley
Author-email: brownbeckley94@gmail.com
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas>=1.5.0
Requires-Dist: biopython>=1.85
Requires-Dist: psutil>=5.9.0
Requires-Dist: requests>=2.28.0
Requires-Dist: tqdm>=4.64.0
Requires-Dist: click>=8.0.0
Requires-Dist: kaptive>=3.1.0
Requires-Dist: beautifulsoup4>=4.11.0
Requires-Dist: lxml>=4.9.0
Requires-Dist: matplotlib>=3.5.0
Requires-Dist: seaborn>=0.12.0
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: license-file
Dynamic: requires-dist
Dynamic: requires-python
Dynamic: summary

Complete K. pneumoniae genomic analysis pipeline: MLST | K/O Locus | AMR | Plasmid | Virulence | Quality Control | Summary Reports

Critical Genes Tracked:
🔴 Carbapenemases (KPC, NDM, OXA-48)
🟠 Colistin (mcr)
🟡 Tigecycline (tetX)
🟢 ICEKp Markers (ybt, clb, iro, rmp)
🔵 Virulence Plasmid Markers (iro, iuc, rmp, rmpA2)
🟣 Biocides & Heavy Metals (qac, sil, mer, ars, pco)
⚪ Adhesins (fim, mrk, ecp)
🔶 Secretion Systems (tss)
💧 Siderophores
🧪 Toxins
