Metadata-Version: 2.4
Name: gffutils
Version: 0.14
Summary: Work with GFF and GTF files in a flexible database framework
Author-email: Ryan Dale <ryan.dale@nih.gov>
License-Expression: MIT
Project-URL: Homepage, https://github.com/daler/gffutils
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: >=3.8
Description-Content-Type: text/x-rst
License-File: LICENSE
Requires-Dist: pyfaidx>=0.5.5.2
Requires-Dist: argh>=0.26.2
Requires-Dist: argcomplete>=1.9.4
Requires-Dist: simplejson
Provides-Extra: test
Requires-Dist: pytest; extra == "test"
Provides-Extra: optional
Requires-Dist: biopython>=1.73; extra == "optional"
Requires-Dist: pybedtools>=0.8.0; extra == "optional"
Provides-Extra: docs
Requires-Dist: make; extra == "docs"
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Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx_rtd_theme; extra == "docs"
Requires-Dist: sphinx-autoapi; extra == "docs"
Dynamic: license-file

gffutils
========

``gffutils`` is a Python package for working with and manipulating the GFF and
GTF format files typically used for genomic annotations.

Files are loaded into a sqlite3 database, allowing much more complex
manipulation of hierarchical features (e.g., genes, transcripts, and exons)
than is possible with plain-text methods alone.

See documentation at https://daler.github.io/gffutils, and GitHub repo at
https:/github.com/daler/gffutils.
