bin/FAVITES-Lite/Dockerfile
bin/FAVITES-Lite/LICENSE
bin/FAVITES-Lite/README.md
bin/FAVITES-Lite/build_env_setup.sh
bin/FAVITES-Lite/conda_build.sh
bin/FAVITES-Lite/example/README.md
bin/FAVITES-Lite/example/README_COVID.md
bin/FAVITES-Lite/example/README_HIV.md
bin/FAVITES-Lite/example/config_COVID.json
bin/FAVITES-Lite/example/config_HIV.json
bin/FAVITES-Lite/example/example.json
bin/FAVITES-Lite/favites_lite.py
bin/FAVITES-Lite/global.json
bin/FAVITES-Lite/metadata_conda_debug.yaml
bin/FAVITES-Lite/package-lock.json
bin/FAVITES-Lite/plugins/__init__.py
bin/FAVITES-Lite/plugins/ancestral_sequence/__init__.py
bin/FAVITES-Lite/plugins/ancestral_sequence/generate_seq.py
bin/FAVITES-Lite/plugins/common.py
bin/FAVITES-Lite/plugins/contact_network/__init__.py
bin/FAVITES-Lite/plugins/contact_network/ngg.py
bin/FAVITES-Lite/plugins/mutation_rates/__init__.py
bin/FAVITES-Lite/plugins/mutation_rates/common_treeswift.py
bin/FAVITES-Lite/plugins/sample_times/__init__.py
bin/FAVITES-Lite/plugins/sample_times/specific_time.py
bin/FAVITES-Lite/plugins/sample_times/state_entry.py
bin/FAVITES-Lite/plugins/sample_times/time_windows.py
bin/FAVITES-Lite/plugins/sequence_evolution/__init__.py
bin/FAVITES-Lite/plugins/sequence_evolution/seqgen.py
bin/FAVITES-Lite/plugins/transmission_network/__init__.py
bin/FAVITES-Lite/plugins/transmission_network/gemf.py
bin/FAVITES-Lite/plugins/viral_phylogeny_seeds/__init__.py
bin/FAVITES-Lite/plugins/viral_phylogeny_seeds/common.py
bin/FAVITES-Lite/plugins/viral_phylogeny_seeds/common_treesap.py
bin/FAVITES-Lite/plugins/viral_phylogeny_trans/__init__.py
bin/FAVITES-Lite/plugins/viral_phylogeny_trans/coatran.py
bin/FAVITES-Lite/scripts/README.md
bin/FAVITES-Lite/scripts/contact_network/README.md
bin/FAVITES-Lite/scripts/contact_network/favites_cn_to_cosmograph.sh
bin/FAVITES-Lite/scripts/distances/README.md
bin/FAVITES-Lite/scripts/distances/single_linkage_clustering.py
bin/FAVITES-Lite/scripts/phylogeny/README.md
bin/FAVITES-Lite/scripts/phylogeny/pairwise_distances.py
bin/FAVITES-Lite/scripts/transmission_network/README.md
bin/FAVITES-Lite/scripts/transmission_network/favites_tn_to_cosmograph.sh
bin/FAVITES-Lite/scripts/transmission_network/states_over_time.py
bin/FAVITES-Lite/webapp/.gitignore
bin/FAVITES-Lite/webapp/README.md
bin/FAVITES-Lite/webapp/package-lock.json
bin/FAVITES-Lite/webapp/package.json
bin/FAVITES-Lite/webapp/public/android-chrome-192x192.png
bin/FAVITES-Lite/webapp/public/android-chrome-512x512.png
bin/FAVITES-Lite/webapp/public/apple-touch-icon.png
bin/FAVITES-Lite/webapp/public/favicon-16x16.png
bin/FAVITES-Lite/webapp/public/favicon-32x32.png
bin/FAVITES-Lite/webapp/public/favicon.ico
bin/FAVITES-Lite/webapp/public/index.html
bin/FAVITES-Lite/webapp/public/logo192.png
bin/FAVITES-Lite/webapp/public/logo512.png
bin/FAVITES-Lite/webapp/public/manifest.json
bin/FAVITES-Lite/webapp/public/robots.txt
bin/FAVITES-Lite/webapp/src/App.css
bin/FAVITES-Lite/webapp/src/App.js
bin/FAVITES-Lite/webapp/src/App.test.js
bin/FAVITES-Lite/webapp/src/app/store.js
bin/FAVITES-Lite/webapp/src/components/Body/Body.js
bin/FAVITES-Lite/webapp/src/components/Body/Body.module.css
bin/FAVITES-Lite/webapp/src/components/Body/BodyModules.js
bin/FAVITES-Lite/webapp/src/components/Header/Alerts.js
bin/FAVITES-Lite/webapp/src/components/Header/ExportModal.js
bin/FAVITES-Lite/webapp/src/components/Header/Header.js
bin/FAVITES-Lite/webapp/src/components/Header/Header.module.css
bin/FAVITES-Lite/webapp/src/components/Header/ImportModal.js
bin/FAVITES-Lite/webapp/src/components/Layout/Layout.js
bin/FAVITES-Lite/webapp/src/components/Layout/Layout.module.css
bin/FAVITES-Lite/webapp/src/components/Sidebar/Component/Component.js
bin/FAVITES-Lite/webapp/src/components/Sidebar/Component/Component.module.css
bin/FAVITES-Lite/webapp/src/components/Sidebar/Sidebar.js
bin/FAVITES-Lite/webapp/src/components/Sidebar/Sidebar.module.css
bin/FAVITES-Lite/webapp/src/features/config/configSlice.js
bin/FAVITES-Lite/webapp/src/features/selected/selectedSlice.js
bin/FAVITES-Lite/webapp/src/features/statuses/statusesSlice.js
bin/FAVITES-Lite/webapp/src/index.css
bin/FAVITES-Lite/webapp/src/index.js
bin/FAVITES-Lite/webapp/src/logo.svg
bin/FAVITES-Lite/webapp/src/reportWebVitals.js
bin/FAVITES-Lite/webapp/src/setupTests.js
bin/FAVITES-Lite/webapp/src/utils/utils.js
bin/favites_lite.py
