Metadata-Version: 2.4
Name: ezfastq
Version: 0.3
Summary: Scan directories for FASTQ files and associate with sample names
Author-email: Daniel Standage <daniel.standage@st.dhs.gov>, Ryan Berger <ryan.berger@st.dhs.gov>
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: rich
Requires-Dist: rich_argparse
Provides-Extra: dev
Requires-Dist: black==25.1; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-cov; extra == "dev"
Dynamic: license-file

# ezfastq

Search a source directory for FASTQ files matching a list of given sample names and copy to a destination directory.


```
# Shell
ezfastq /path/to/data/ sample1 sample2 sample3 --workdir=path/to/dest/
ezfastq /opt/seq/ samplenames.txt --workdir=out/

# Python
import ezfastq
samples = ["sample1", "sample2", "sample3"]
source = "/path/to/seqs/"
dest = "new/path/"
ezfastq.api.copy(samples, source, workdir=dest)
```
