bin/earlGreyParTEA
bin/earlGreyParTEA_AnnotationOnly
bin/earlGreyParTEA_LibConstruct
share/earlgrey-partea-0.1.6/Snakefile
share/earlgrey-partea-0.1.6/config/config.yaml
share/earlgrey-partea-0.1.6/rules/annotate.smk
share/earlgrey-partea-0.1.6/rules/busco_phylo.smk
share/earlgrey-partea-0.1.6/rules/clustering.smk
share/earlgrey-partea-0.1.6/rules/lib_construct.smk
share/earlgrey-partea-0.1.6/rules/saturation.smk
share/earlgrey-partea-0.1.6/rules/shared_unique_content.smk
share/earlgrey-partea-0.1.6/scripts/__init__.py
share/earlgrey-partea-0.1.6/scripts/busco_summary_plot.py
share/earlgrey-partea-0.1.6/scripts/busco_te_qc_plot.py
share/earlgrey-partea-0.1.6/scripts/cluster_utils.py
share/earlgrey-partea-0.1.6/scripts/combine_results.sh
share/earlgrey-partea-0.1.6/scripts/concat_lines.sh
share/earlgrey-partea-0.1.6/scripts/configure_dfam.sh
share/earlgrey-partea-0.1.6/scripts/extract_busco_aa.py
share/earlgrey-partea-0.1.6/scripts/generate_config.py
share/earlgrey-partea-0.1.6/scripts/generate_dag.py
share/earlgrey-partea-0.1.6/scripts/make_directories.sh
share/earlgrey-partea-0.1.6/scripts/on_start_functions.py
share/earlgrey-partea-0.1.6/scripts/saturation_plot.py
share/earlgrey-partea-0.1.6/scripts/shared_unique_plot.py
share/earlgrey-partea-0.1.6/scripts/to_lowercase.sh
share/earlgrey-partea-0.1.6/scripts/to_uppercase.sh
