bin/duphist
bin/scripts/build_gene_ks_info.pl
bin/scripts/build_pair.pl
bin/scripts/build_table.pl
bin/scripts/bulk_build_gene_ks_info.pl
bin/scripts/bulk_build_pair.pl
bin/scripts/bulk_build_table.pl
bin/scripts/bulk_extract_multipair_cds.pl
bin/scripts/bulk_extract_pair_cds.pl
bin/scripts/bulk_hcluster_rscript.pl
bin/scripts/bulk_index_ks_avg.pl
bin/scripts/bulk_index_node.pl
bin/scripts/bulk_index_pairks.pl
bin/scripts/bulk_ks_to_matrix.pl
bin/scripts/bulk_lift_gene_in_nodeinfo.pl
bin/scripts/bulk_msa.pl
bin/scripts/bulk_nodeinfo_to_newick.pl
bin/scripts/bulk_prank_kaks.pl
bin/scripts/bulk_replace_multipair_hcluster.pl
bin/scripts/bulk_smooth_process.pl
bin/scripts/bulk_tree.pl
bin/scripts/bulk_validate_genecount.pl
bin/scripts/cat_kaks.pl
bin/scripts/copy_tree.pl
bin/scripts/duplication.config
bin/scripts/extract_multipair_cds.pl
bin/scripts/extract_pair_cds.pl
bin/scripts/fas_to_axt.pl
bin/scripts/hcluster_rscript.pl
bin/scripts/index_ks_avg.pl
bin/scripts/index_node.pl
bin/scripts/index_pairks.pl
bin/scripts/ks_to_matrix.pl
bin/scripts/lift_gene_in_nodeinfo.pl
bin/scripts/main_pipeline_ver_perl.pl
bin/scripts/nodeinfo_to_newick.pl
bin/scripts/precheck.pl
bin/scripts/prepare_pep.pl
bin/scripts/replace_multipair_hcluster.pl
bin/scripts/run_bulk.pl
bin/scripts/smooth_inbetween_inv.pl
bin/scripts/smooth_lastleaf_inv.pl
bin/scripts/smooth_parent_inv.pl
bin/scripts/validate_cdsnum.pl
bin/scripts/validate_genecount.pl
bin/scripts/validate_ks_pairks.pl
bin/scripts/validate_run.pl
bin/scripts/validate_run_out.pl
