Profiles the Carbapenamase genes from the genome assemblies (One Line, Title Case)

Documentation for package ‘CPgeneProfiler’ version 2.1.0.9000

assemblystat	Generate assembly statistics from input genomes assemblies (FASTA)
cocarriage	Find cocarriage of CP genes in the input genomes
cpblast	Generate NCBI BLAST Results by aligning input genome assemblies against Carbapenamase (CP) gene database
CPcontlen	Contig length function
cpcore	CPgeneProfiler Core function
CPgeneProfiler	Generate a profile of carbapenamase genes from the genome assemblies
cpprofile	Carbapenamase Gene Profile
cp_summarize	CPgeneProfiler Results Summary
db_summary	CPgeneProfiler Database Summary
files2move	Move the output files for summarizing CPgeneProfiler Results
filt_blast	Filter BLAST results
jpeg2pdf	Converts jpeg images to pdf for summary report
jpeg_merge	Merge jpeg images to pdf for summary report
pdfs2pdf	Converts multiple pdf files with plots to single pdf for summary report
plot_conlen	Plot CP gene contig length distribution
png2pdf	Converts png images to pdf for summary report
png_merge	Merge png images to pdf for summary report
tiff2pdf	Converts tiff images to pdf for summary report
tiff_merge	Merge tiff images to pdf for summary report
upsetR_plot	UpsetR - Set intersection plot visualization