Cluster report for cluster CT_0002

Basic information

This is a report for a single cluster

  • Cluster name CT_0002

  • Related external names are EpiCluster_2

  • Serotype/clade information Concord

  • Last update on 2020-11-24

  • Latest sample in cluster is C_GMI15-002-D-: 2020-07-01 (date of analysis)

  • Oldest sample in cluster is A_GMI15-002-D-: 2020-02-01 (date of analysis)

  • Duration: 151

  • Cluster samples originate from partnerA, partnerB, partnerC

  • Cluster contains 3 samples

  • The cluster can be divided into the following number of subclusters: at 3 allele differences:2

Cluster stats

Information about subclusters

Count of subcluster members for samples clustered at 3 allele differences.
subcluster n
Beta 2

Note that sub-clusters containing only a single sample are omitted here.

Provided samples per date

Distance matrix

single-linkage tree

## png 
##   2

Subcluster details

Color coding

The following color code is applied:

  • partnerA
  • partnerB
  • partnerC

For the recency of samples, the color code is:

  • Sample added in < 14 days
  • Sample added in < 30 days
  • Sample added in < 90 days
  • no color (white) denotes samples added before 90 days

Furhermore, subclusters are marked in different colors.