This is a report for a single cluster
Cluster name CT_0001
Related external names are NA
Serotype/clade information Senftenberg
Last update on 2020-11-24
Latest sample in cluster is C_GMI-17-002-D-: 2020-09-01 (date of analysis)
Oldest sample in cluster is B_GMI-17-002-D-: 2020-02-11 (date of analysis)
Duration: 203
Cluster samples originate from partnerA, partnerB, partnerC
Cluster contains 3 samples
The cluster can be divided into the following number of subclusters: at 3 allele differences:2
subcluster | n |
---|---|
Beta | 2 |
Note that sub-clusters containing only a single sample are omitted here.
## png
## 2
name | file | Link |
---|---|---|
cluster_information.tsv | cluster_information.tsv | cluster_information.tsv |
clustering_tree.nwk | clustering_tree.nwk | clustering_tree.nwk |
clustering_tree.png | clustering_tree.png | clustering_tree.png |
clusterreport_files | clusterreport_files | clusterreport_files |
distance_matrix.png | distance_matrix.png | distance_matrix.png |
distance_matrix.tsv | distance_matrix.tsv | distance_matrix.tsv |
mapping_sample2subclustername.tsv | mapping_sample2subclustername.tsv | mapping_sample2subclustername.tsv |
The following color code is applied:
For the recency of samples, the color code is:
Furhermore, subclusters are marked in different colors.