Bcftools mpileup command line wrapper.
Bcftools mpileup command line arguments.
Bcftools norm command line wrapper.
Bcftools norm command line arguments.
Bedtools intersect command line wrapper.
Bedtools intersect command line arguments.
Bowtie command line wrapper.
Bowtie 2 command line wrapper.
Bowtie 2 command line arguments.
Bowtie command line arguments.
Bwa command line wrapper.
Bwa command line arguments.
Cannoli main.
Cannoli module, binds the default list of command groups.
Freebayes command line wrapper.
Freebayes command line arguments.
GEM-Mapper command line wrapper.
GEM-Mapper command line arguments.
Interleaves two FASTQ files.
Minimap2 command line wrapper.
Minimap2 command line arguments.
Sample reads from interleaved FASTQ format.
Samtools mpileup command line wrapper.
Samtools mpileup command line arguments.
SnpEff command line wrapper.
SnpEff command line arguments.
Vep command line wrapper.
Vep command line arguments.
Vt normalize command line wrapper.
Vt normalize command line arguments.