Call variants from the alignments in this AlignmentRecordDataset with bcftools mpileup via Cannoli.
Call variants from the alignments in this AlignmentRecordDataset with bcftools mpileup via Cannoli.
Bcftools mpileup function arguments.
Validation stringency. Defaults to ValidationStringency.LENIENT.
VariantContextDataset.
Call variants from the alignments in this AlignmentRecordDataset with freebayes via Cannoli.
Call variants from the alignments in this AlignmentRecordDataset with freebayes via Cannoli.
Freebayes function arguments.
Validation stringency. Defaults to ValidationStringency.LENIENT.
VariantContextDataset.
Call variants from the alignments in this AlignmentRecordDataset with samtools mpileup via Cannoli.
Call variants from the alignments in this AlignmentRecordDataset with samtools mpileup via Cannoli.
Samtools mpileup function arguments.
Validation stringency. Defaults to ValidationStringency.LENIENT.
VariantContextDataset.