org
.
bdgenomics
.
cannoli
.
builder
CommandBuilder
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package builder
abstract
class
CommandBuilder
extends
Serializable
Linear Supertypes
Serializable
,
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,
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LocalBuilder
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CommandBuilder
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Instance Constructors
new
CommandBuilder
(
executable:
String
)
Attributes
protected[
org.bdgenomics.cannoli.builder
]
new
CommandBuilder
()
Attributes
protected[
org.bdgenomics.cannoli.builder
]
Abstract Value Members
abstract
def
build
()
:
List
[
String
]
Concrete Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
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final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
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final
def
add
(
arguments:
Iterable
[
String
]
)
:
CommandBuilder
final
def
add
(
arguments:
<repeated...>
[
String
]
)
:
CommandBuilder
final
def
addArgument
(
argument:
String
)
:
CommandBuilder
final
def
addArguments
(
arguments:
Iterable
[
String
]
)
:
CommandBuilder
final
def
addArguments
(
arguments:
<repeated...>
[
String
]
)
:
CommandBuilder
final
def
addEnvironment
(
environment:
Map
[
String
,
String
]
)
:
CommandBuilder
final
def
addEnvironment
(
variable:
String
,
value:
String
)
:
CommandBuilder
final
def
addFile
(
file:
String
)
:
CommandBuilder
final
def
addFiles
(
files:
Iterable
[
String
]
)
:
CommandBuilder
final
def
addFiles
(
files:
<repeated...>
[
String
]
)
:
CommandBuilder
final
def
addMount
(
source:
String
,
target:
String
)
:
CommandBuilder
final
def
addMount
(
mount:
String
)
:
CommandBuilder
final
def
addMounts
(
mounts:
Map
[
String
,
String
]
)
:
CommandBuilder
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
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Annotations
@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
equals
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getArguments
()
:
List
[
String
]
final
def
getClass
()
:
Class
[_]
Definition Classes
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final
def
getEnvironment
()
:
Map
[
String
,
String
]
final
def
getExecutable
()
:
String
final
def
getFiles
()
:
List
[
String
]
final
def
getFlankSize
()
:
Integer
final
def
getImage
()
:
String
final
def
getMounts
()
:
Map
[
String
,
String
]
final
def
getOptFlankSize
()
:
Optional
[
Integer
]
final
def
getOptTimeout
()
:
Optional
[
Long
]
final
def
getSudo
()
:
Boolean
final
def
getTimeout
()
:
Long
def
hashCode
()
:
Int
Definition Classes
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final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
final
def
isSudo
()
:
Boolean
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
final
def
reset
()
:
CommandBuilder
final
def
setExecutable
(
executable:
String
)
:
CommandBuilder
final
def
setFlankSize
(
flankSize:
Integer
)
:
CommandBuilder
final
def
setImage
(
image:
String
)
:
CommandBuilder
final
def
setSudo
(
sudo:
Boolean
)
:
CommandBuilder
final
def
setTimeout
(
duration:
Long
,
timeUnit:
TimeUnit
)
:
CommandBuilder
final
def
setTimeout
(
timeout:
Long
)
:
CommandBuilder
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toString
()
:
String
Definition Classes
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final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
Serializable
Inherited from
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