Class

org.bdgenomics.cannoli.cli

SampleReadsArgs

Related Doc: package cli

Permalink

class SampleReadsArgs extends Args4jBase with ADAMSaveAnyArgs with ParquetArgs

Linear Supertypes
ParquetArgs, ADAMSaveAnyArgs, SaveArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. SampleReadsArgs
  2. ParquetArgs
  3. ADAMSaveAnyArgs
  4. SaveArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new SampleReadsArgs()

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  5. var asSingleFile: Boolean

    Permalink
    Definition Classes
    SampleReadsArgs → ADAMSaveAnyArgs
  6. var blockSize: Int

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  7. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. var compressionCodec: CompressionCodecName

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  9. var deferMerging: Boolean

    Permalink
    Definition Classes
    SampleReadsArgs → ADAMSaveAnyArgs
  10. var disableDictionaryEncoding: Boolean

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  11. var disableFastConcat: Boolean

    Permalink
    Definition Classes
    SampleReadsArgs → ADAMSaveAnyArgs
  12. var doPrintUsage: Boolean

    Permalink
    Definition Classes
    Args4jBase
  13. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  14. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  15. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  16. var fraction: Double

    Permalink
  17. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  18. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  19. var inputPath: String

    Permalink
  20. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  21. var logLevel: String

    Permalink
    Definition Classes
    ParquetArgs
  22. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  23. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  24. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  25. var outputPath: String

    Permalink
    Definition Classes
    SampleReadsArgs → SaveArgs
  26. var pageSize: Int

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  27. var printMetrics: Boolean

    Permalink
    Definition Classes
    Args4jBase
  28. var seed: Long

    Permalink
  29. var sortFastqOutput: Boolean

    Permalink
    Definition Classes
    SampleReadsArgs → ADAMSaveAnyArgs
  30. var stringency: String

    Permalink
  31. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  32. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  33. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  34. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  35. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from ADAMSaveAnyArgs

Inherited from SaveArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped