Class

org.bdgenomics.cannoli.cli

BedtoolsIntersectArgs

Related Doc: package cli

Permalink

class BedtoolsIntersectArgs extends cannoli.BedtoolsIntersectArgs with ADAMSaveAnyArgs with ParquetArgs

Bedtools intersect command line arguments.

Linear Supertypes
ParquetArgs, ADAMSaveAnyArgs, SaveArgs, ParquetRDDArgs, cannoli.BedtoolsIntersectArgs, Args4jBase, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. BedtoolsIntersectArgs
  2. ParquetArgs
  3. ADAMSaveAnyArgs
  4. SaveArgs
  5. ParquetRDDArgs
  6. BedtoolsIntersectArgs
  7. Args4jBase
  8. AnyRef
  9. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new BedtoolsIntersectArgs()

    Permalink

Value Members

  1. final def !=(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  4. var a: String

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  5. var addFiles: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  6. final def asInstanceOf[T0]: T0

    Permalink
    Definition Classes
    Any
  7. var asSingleFile: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs → ADAMSaveAnyArgs
  8. var b: String

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  9. var blockSize: Int

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  10. def clone(): AnyRef

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  11. var compressionCodec: CompressionCodecName

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  12. var deferMerging: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs → ADAMSaveAnyArgs
  13. var disableDictionaryEncoding: Boolean

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  14. var disableFastConcat: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs → ADAMSaveAnyArgs
  15. var doPrintUsage: Boolean

    Permalink
    Definition Classes
    Args4jBase
  16. final def eq(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  17. def equals(arg0: Any): Boolean

    Permalink
    Definition Classes
    AnyRef → Any
  18. var executable: String

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  19. def finalize(): Unit

    Permalink
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  20. final def getClass(): Class[_]

    Permalink
    Definition Classes
    AnyRef → Any
  21. def hashCode(): Int

    Permalink
    Definition Classes
    AnyRef → Any
  22. var image: String

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  23. var inputPath: String

    Permalink
  24. final def isInstanceOf[T0]: Boolean

    Permalink
    Definition Classes
    Any
  25. var limitProjection: Boolean

    Permalink
  26. var logLevel: String

    Permalink
    Definition Classes
    ParquetArgs
  27. final def ne(arg0: AnyRef): Boolean

    Permalink
    Definition Classes
    AnyRef
  28. final def notify(): Unit

    Permalink
    Definition Classes
    AnyRef
  29. final def notifyAll(): Unit

    Permalink
    Definition Classes
    AnyRef
  30. var outputPath: String

    Permalink
    Definition Classes
    BedtoolsIntersectArgs → SaveArgs
  31. var pageSize: Int

    Permalink
    Definition Classes
    ParquetArgs → ParquetRDDArgs
  32. var partitions: Int

    Permalink
  33. var printMetrics: Boolean

    Permalink
    Definition Classes
    Args4jBase
  34. var sortFastqOutput: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs → ADAMSaveAnyArgs
  35. var sorted: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  36. var sudo: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  37. final def synchronized[T0](arg0: ⇒ T0): T0

    Permalink
    Definition Classes
    AnyRef
  38. def toString(): String

    Permalink
    Definition Classes
    AnyRef → Any
  39. var useDocker: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  40. var useSingularity: Boolean

    Permalink
    Definition Classes
    BedtoolsIntersectArgs
  41. final def wait(): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  42. final def wait(arg0: Long, arg1: Int): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  43. final def wait(arg0: Long): Unit

    Permalink
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from ADAMSaveAnyArgs

Inherited from SaveArgs

Inherited from ParquetRDDArgs

Inherited from cannoli.BedtoolsIntersectArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped