#
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
–
deprecated
org
org.bdgenomics
org.bdgenomics.cannoli
(class)
BcftoolsMpileup
(class)
BcftoolsMpileupArgs
(class)
BcftoolsNorm
(class)
BcftoolsNormArgs
(class)
BedtoolsIntersect
(class)
BedtoolsIntersectArgs
(class)
Bowtie
(class)
Bowtie2
(class)
Bowtie2Args
(class)
BowtieArgs
(class)
Bwa
(class)
BwaArgs
(object)
Cannoli
(class)
CannoliFn
(class)
Freebayes
(class)
FreebayesArgs
(class)
Gem
(class)
GemArgs
(class)
Minimap2
(class)
Minimap2Args
(class)
SamtoolsMpileup
(class)
SamtoolsMpileupArgs
(class)
SnpEff
(class)
SnpEffArgs
(class)
Vep
(class)
VepArgs
(class)
VtNormalize
(class)
VtNormalizeArgs
org.bdgenomics.cannoli.builder
(class)
CommandBuilder
(class)
CommandBuilders
(class)
DockerBuilder
(class)
LocalBuilder
(class)
SingularityBuilder