c

org.bdgenomics.cannoli

MagicBlastArgs

class MagicBlastArgs extends Args4jBase

Magic-BLAST function arguments.

Linear Supertypes
Args4jBase, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. MagicBlastArgs
  2. Args4jBase
  3. AnyRef
  4. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new MagicBlastArgs()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. var addFiles: Boolean
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  7. var db: String
  8. var doPrintUsage: Boolean
    Definition Classes
    Args4jBase
  9. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  10. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  11. var executable: String
  12. var gapExtend: Integer
  13. var gapOpen: Integer
  14. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  15. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  16. var image: String
  17. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  18. var maxEditDistance: Integer
  19. var maxIntronLength: Integer
  20. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  21. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  22. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  23. var penalty: Integer
  24. var percentIdentity: Double
  25. var score: String
  26. var stringency: String
  27. var sudo: Boolean
  28. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  29. def toString(): String
    Definition Classes
    AnyRef → Any
  30. var transcriptome: Boolean
  31. var useDocker: Boolean
  32. var useSingularity: Boolean
  33. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  34. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  35. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  36. var wordSize: Integer

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
    Deprecated

    (Since version ) see corresponding Javadoc for more information.

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped