Uses of Class
biotransformer.transformation.MRPatterns.ReactionName
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Packages that use MRPatterns.ReactionName Package Description biotransformer.transformation -
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Uses of MRPatterns.ReactionName in biotransformer.transformation
Fields in biotransformer.transformation with type parameters of type MRPatterns.ReactionName Modifier and Type Field Description java.util.LinkedHashMap<MRPatterns.ReactionName,MRPatterns.ReactionName[]>
MReactionsFilter. btPriorityHash
Methods in biotransformer.transformation that return MRPatterns.ReactionName Modifier and Type Method Description MRPatterns.ReactionName
Biotransformation. getReactionType()
static MRPatterns.ReactionName
MRPatterns.ReactionName. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static MRPatterns.ReactionName[]
MRPatterns.ReactionName. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in biotransformer.transformation that return types with arguments of type MRPatterns.ReactionName Modifier and Type Method Description java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.ArrayList<MetabolicReaction> reactions)
static java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.ArrayList<MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,MRPatterns.ReactionName[]> btph)
java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction> reactions)
static java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,MRPatterns.ReactionName[]> btph)
java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactionsLSM(java.util.LinkedHashMap<java.lang.String,MetabolicReaction> reactions)
Method parameters in biotransformer.transformation with type arguments of type MRPatterns.ReactionName Modifier and Type Method Description static java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.ArrayList<MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,MRPatterns.ReactionName[]> btph)
java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction> reactions)
static java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction>
MReactionsFilter. filterReactions(java.util.LinkedHashMap<MRPatterns.ReactionName,MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,MRPatterns.ReactionName[]> btph)
Constructors in biotransformer.transformation with parameters of type MRPatterns.ReactionName Constructor Description Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, Enzyme.EnzymeName enzymeName, org.openscience.cdk.interfaces.IAtomContainerSet products)
Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, BioSystem.BioSystemName bsysName)
Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, java.lang.Double score, BioSystem.BioSystemName bsysName)
MetabolicReaction(MRPatterns.ReactionName r_name)
MetabolicReaction(MRPatterns.ReactionName r_name, ambit2.smarts.SMIRKSManager smrkMan)
MetabolicReaction(MRPatterns.ReactionName r_name, java.lang.String commmonName, java.lang.String reactionsBTMRID, java.lang.String reactionSMIRKS, java.util.ArrayList<java.lang.String> reactantsSMARTS, java.util.ArrayList<java.lang.String> negativeReactantsSMARTS, ambit2.smarts.SMIRKSManager smrkMan)
MetabolicReaction(MRPatterns.ReactionName r_name, java.lang.String commmonName, java.lang.String reactionSMIRKS, java.util.ArrayList<java.lang.String> reactantsSMARTS, java.util.ArrayList<java.lang.String> negativeReactantsSMARTS, ambit2.smarts.SMIRKSManager smrkMan)
MetabolicReaction(MRPatterns.ReactionName r_name, java.lang.String reactionSMIRKS, java.util.ArrayList<java.lang.String> reactantsSMARTS, java.util.ArrayList<java.lang.String> negativeReactantsSMARTS, ambit2.smarts.SMIRKSManager smrkMan)
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