Class BioSystem

  • Direct Known Subclasses:
    EnvMicro, Human

    public class BioSystem
    extends java.lang.Object
    Author:
    Yannick Djoumbou Feunang
    • Constructor Detail

      • BioSystem

        public BioSystem​(BioSystem.BioSystemName bsName,
                         org.codehaus.jackson.map.ObjectMapper mapper)
                  throws org.codehaus.jackson.JsonParseException,
                         org.codehaus.jackson.map.JsonMappingException,
                         java.io.IOException
        Throws:
        org.codehaus.jackson.JsonParseException
        org.codehaus.jackson.map.JsonMappingException
        java.io.IOException
    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
                         throws org.codehaus.jackson.JsonParseException,
                                org.codehaus.jackson.map.JsonMappingException,
                                java.io.IOException
        Throws:
        org.codehaus.jackson.JsonParseException
        org.codehaus.jackson.map.JsonMappingException
        java.io.IOException
      • getEnzymesList

        public java.util.ArrayList<Enzyme> getEnzymesList()
      • getSmirksManager

        public ambit2.smarts.SMIRKSManager getSmirksManager()
      • getReactionsHash

        public java.util.LinkedHashMap<java.lang.String,​MetabolicReaction> getReactionsHash()
      • getReactionsORatios

        public java.util.LinkedHashMap<java.lang.String,​java.lang.Double> getReactionsORatios()