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D
- D_2_HYDROXY_ACID_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
- D_GLYCOSIDE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- DEARYLATION_OF_ORGANOPHOSPHOSULFUR_COMPOUNDS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEARYLATION_OF_ORGANOPHOSPHOSULFUR_COMPOUNDS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DECARBOXYLASE - biotransformer.biomolecule.Enzyme.EnzymeName
- DECARBOXYLATION_OF_FUSED_BENZENE - biotransformer.transformation.MRPatterns.ReactionName
- Deglycolyzer - Class in biotransformer.btransformers
- Deglycolyzer(BioSystem.BioSystemName) - Constructor for class biotransformer.btransformers.Deglycolyzer
- DEGLYCOSYLATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN10 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN11 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN12 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN13 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN15 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN16 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN17 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN18 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN19 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN20 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN21 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN22 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN23 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN24 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN25 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN26 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN27 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN28 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN29 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN30 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN31 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN32 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN33 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN34 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN35 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN36 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN37 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN38 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN39 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN40 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN41 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN42 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN43 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN5 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN6 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN7 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN8 - biotransformer.transformation.MRPatterns.ReactionName
- DEGLYCOSYLATION_PATTERN9 - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_ANTHOCYANIDIN_TO_CHALCONE - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_DIHYDROXYENTERODIOL_TO_DIHYDROXYENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_DIHYDROXYENTERODIOL_TO_ENTERODIOL - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_DIHYDROXYENTEROLACTONE_TO_ENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_ENTERODIOL_ENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_LARICIRESINOL_TO_SECOISOLARICIRESINOL - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_MATAIRESINOL_TO_DIHYDROXYENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_MEDIORESINOL_TO_PINORESINOL - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_PHENYLVALEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_PINORESINOL_TO_LARICIRESINOL - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_SECOISOLARICIRESINOL_TO_DIHYDROXYENTERODIOL - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_SESAMIN_1 - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_SESAMIN_2 - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_OF_SESAMIN_3 - biotransformer.transformation.MRPatterns.ReactionName
- DEGRADATION_TO_PHLOROGCLUCINOL_ALDEHYDE - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDDROGENATION_OF_PYRROLIZIDINE_ALKALOIDS - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_4_ALKYL_SUBSTITUTED_14_DIHYDROPYRIDINES - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_4_ARYL_SUBSTITUTED_14_DIHYDROPYRIDINES - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_ALPHA_BETA_UNSATURATED_ALDEHYDE_CARBOXYLIC_ACID_OR_ESTER - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_ALPHA_BETA_UNSATURATED_AMIDE - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_FUSED_PYRROLIDINES - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_PRIMARY_ALCOHOL_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_PRIMARY_ALCOHOL_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_SECONDARY_ALCOHOL_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROGENATION_OF_SECONDARY_ALCOHOL_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROHALOGENATION - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROXYLASE - biotransformer.biomolecule.Enzyme.EnzymeName
- DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROXYLATION_OF_HYDROXY_PHENYL_AND_BENZOIC_ACICDS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEHYDROXYLATION_OF_HYDROXY_PHENYL_AND_BENZOIC_ACICDS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DELTA_14_STEROL_REDUCTION - biotransformer.transformation.MRPatterns.ReactionName
- DELTA_7_STEROL_56_DESATURATION - biotransformer.transformation.MRPatterns.ReactionName
- DELTA_7_STEROL_56_SATURATION - biotransformer.transformation.MRPatterns.ReactionName
- DEMETHYLASE - biotransformer.biomolecule.Enzyme.EnzymeName
- DEMETHYLATION_OF_METHOXY_PHENYL_AND_BENZOIC_ACIDS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DEMETHYLATION_OF_METHOXY_PHENYL_AND_BENZOIC_ACIDS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DEMETHYLATION_OF_VANILLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
- DENITROSATION - biotransformer.transformation.MRPatterns.ReactionName
- DEOXYBENZOIN_DEGRADATION - biotransformer.transformation.MRPatterns.ReactionName
- DEPSIDE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- DESTHIOPROPYLATION - biotransformer.transformation.MRPatterns.ReactionName
- DESULFURATION - biotransformer.transformation.MRPatterns.ReactionName
- DESULFURATION_OF_ORGANOISOTHIOCYANATE - biotransformer.transformation.MRPatterns.ReactionName
- DESULFURATION_OF_ORGANOPHOSPHORODITHIOATES - biotransformer.transformation.MRPatterns.ReactionName
- DESULFURATION_OF_ORGANOPHOSPHOROTHIOATES - biotransformer.transformation.MRPatterns.ReactionName
- DESULFURIZATION_OF_THIOAMIDE_INTO_AMIDE - biotransformer.transformation.MRPatterns.ReactionName
- DESULPHURIZATION_OF_PHOSPHOR - biotransformer.transformation.MRPatterns.ReactionName
- DIACYLGLYCEROL_O_ACYLATION - biotransformer.transformation.MRPatterns.ReactionName
- DIAZO_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
- DIAZONIUM_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
- DIENELACTONE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- DIGALACTOSYLCERAMIDE_3P_SULFATION - biotransformer.transformation.MRPatterns.ReactionName
- DIGALACTOSYLCERAMIDE_GALACTO_HYDROLYSIS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DIGALACTOSYLCERAMIDE_GALACTO_HYDROLYSIS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DIGALACTOSYLDIACYLGLYCEROL_GALACTO_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- DIGALACTOSYLDIACYLGLYCEROL_SYNTHESIS - biotransformer.transformation.MRPatterns.ReactionName
- DIHALO_ELIMINATION - biotransformer.transformation.MRPatterns.ReactionName
- DIHYDROCHALCONE_DEGRADATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- DIHYDROCHALCONE_DEGRADATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- DIHYDROCHALCONE_DEGRADATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
- DIHYDROCHALCONE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- DIHYDROXYLATION_OF_DOUBLE_BOND - biotransformer.transformation.MRPatterns.ReactionName
- DINUCLEOTIDE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- display() - Method in class biotransformer.biomolecule.Enzyme
- display() - Method in class biotransformer.transformation.Biotransformation
- display() - Method in class biotransformer.transformation.MetabolicReaction
- DITHIOCARBAMIC_ACID_S_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
- divideSdfFile(String, int) - Static method in class biotransformer.utils.FileUtilities
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