Uses of Class
biotransformer.utils.MetaboliteFinder.FinderOption
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Packages that use MetaboliteFinder.FinderOption Package Description biotransformer.utils -
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Uses of MetaboliteFinder.FinderOption in biotransformer.utils
Methods in biotransformer.utils that return MetaboliteFinder.FinderOption Modifier and Type Method Description static MetaboliteFinder.FinderOption
MetaboliteFinder.FinderOption. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static MetaboliteFinder.FinderOption[]
MetaboliteFinder.FinderOption. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in biotransformer.utils with parameters of type MetaboliteFinder.FinderOption Modifier and Type Method Description org.openscience.cdk.interfaces.IAtomContainerSet
MetaboliteFinder. findAllEnvMicroMetabolites(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, int nrOfSteps, boolean annotate, MetaboliteFinder.FinderOption opt)
void
MetaboliteFinder. findAllEnvMicroMetabolites(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, int nrOfSteps, boolean annotate, java.lang.String outputFileName, MetaboliteFinder.FinderOption opt)
void
MetaboliteFinder. findAllEnvMicroMetabolitesToCSV(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, int nrOfSteps, boolean annotate, java.lang.String outputFileName, MetaboliteFinder.FinderOption opt)
org.openscience.cdk.interfaces.IAtomContainerSet
MetaboliteFinder. findAllHumanMetabolites(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, int nrOfSteps, boolean annotate, MetaboliteFinder.FinderOption opt)
void
MetaboliteFinder. findAllHumanMetabolites(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, int nrOfSteps, boolean annotate, java.lang.String outputFileName, MetaboliteFinder.FinderOption opt)
void
MetaboliteFinder. findAllHumanMetabolitesToCSV(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, int nrOfSteps, boolean annotate, java.lang.String outputFileName, MetaboliteFinder.FinderOption opt)
org.openscience.cdk.interfaces.IAtomContainerSet
MetaboliteFinder. findSuperbioMetabolites(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, boolean annotate, MetaboliteFinder.FinderOption opt)
void
MetaboliteFinder. findSuperbioMetabolites(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, boolean annotate, java.lang.String outputFileName, MetaboliteFinder.FinderOption opt)
void
MetaboliteFinder. findSuperbioMetabolitesToCSV(org.openscience.cdk.interfaces.IAtomContainer startingCompound, java.util.ArrayList<java.lang.String> mass_formulas, double massTolerance, boolean annotate, java.lang.String outputFileName, MetaboliteFinder.FinderOption opt)
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