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B

B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
 
B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
 
B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
 
B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
 
BACTERIAL_BILE_SALT_12_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
 
BACTERIAL_BILE_SALT_3_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
 
BACTERIAL_BILE_SALT_7_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
 
BACTERIAL_LACTONASE - biotransformer.biomolecule.Enzyme.EnzymeName
 
BACTERIAL_NITROREDUCTASE - biotransformer.biomolecule.Enzyme.EnzymeName
 
BENZALDEHYDE_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
 
BENZOIC_ACID_DECARBOXYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_D_GALACTOSIDE_6_ACETYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_D_GALACTOSYL_BETA_D_GLUCOSYL_CERAMIDE_ACETYLGALACTOSAMINE_TRANSFER - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_D_GLUCORONOSIDE_GLUCURONOSOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_GLUCORONOSIDE_GLUCURONOSOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
 
BETA_HYDROXYLATED_FATTY_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
 
BETA_OXIDATION_OF_CARBXOYLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
 
BILE_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
 
BILE_ACID_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
 
BIOSYNTHESIS_OF_AMINO_ACIDS - biotransformer.transformation.MetabolicPathway.MPathwayName
 
BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS - biotransformer.transformation.MetabolicPathway.MPathwayName
 
bioSysName - Variable in class biotransformer.transformation.MReactionsFilter
 
BioSystem - Class in biotransformer.biosystems
 
BioSystem(BioSystem.BioSystemName, ArrayList<Enzyme>) - Constructor for class biotransformer.biosystems.BioSystem
 
BioSystem(BioSystem.BioSystemName, ObjectMapper) - Constructor for class biotransformer.biosystems.BioSystem
 
BioSystem.BioSystemName - Enum in biotransformer.biosystems
 
Biotransformation - Class in biotransformer.transformation
 
Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, Enzyme.EnzymeName, IAtomContainerSet) - Constructor for class biotransformer.transformation.Biotransformation
 
Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, ArrayList<Enzyme.EnzymeName>, IAtomContainerSet, BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.Biotransformation
 
Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, ArrayList<Enzyme.EnzymeName>, IAtomContainerSet, Double, BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.Biotransformation
 
Biotransformer - Class in biotransformer.btransformers
 
Biotransformer(BioSystem.BioSystemName) - Constructor for class biotransformer.btransformers.Biotransformer
 
biotransformer.biomolecule - package biotransformer.biomolecule
This class implements the class of metabolic enzymes.
biotransformer.biosystems - package biotransformer.biosystems
 
biotransformer.btransformers - package biotransformer.btransformers
 
biotransformer.esaprediction - package biotransformer.esaprediction
 
biotransformer.fingerprint - package biotransformer.fingerprint
 
biotransformer.transformation - package biotransformer.transformation
 
biotransformer.utils - package biotransformer.utils
 
biotransformer.version - package biotransformer.version
 
BioTransformerDBBuilder - Class in biotransformer.utils
 
BioTransformerDBBuilder() - Constructor for class biotransformer.utils.BioTransformerDBBuilder
 
BiotransformerExecutable - Class in executable
 
BiotransformerExecutable() - Constructor for class executable.BiotransformerExecutable
 
BISALLYLIC_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
bSystem - Variable in class biotransformer.btransformers.Biotransformer
 
btPriorityHash - Variable in class biotransformer.transformation.MReactionsFilter
 
buildBiotransformationList(String, String) - Method in class biotransformer.utils.BioTransformerDBBuilder
 
buildCYP450ReactionLibrary(String) - Method in class biotransformer.utils.BioTransformerDBBuilder
 
buildCYPspecificitySDFFileFromDB(String, String) - Method in class biotransformer.utils.BioTransformerDBBuilder
 
buildSdfFromTSV(String) - Static method in class biotransformer.utils.FileUtilities
 
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