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IMIDAZOLIDINE_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
 
IMINIUM_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
 
inchiGenFactory - Variable in class biotransformer.btransformers.Biotransformer
 
inchiGenFactory - Static variable in class biotransformer.utils.ChemStructureExplorer
 
inchiGenFactory - Variable in class biotransformer.utils.MetaboliteFinder
 
inchikeyEqualityHolds(IAtomContainer, IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
Given two molecules, find out whether they are equal.
INOSITOL_3_PHOSPHATE_TRANSFER_TO_CDP_DIACYLGLYCEROL - biotransformer.transformation.MRPatterns.ReactionName
 
INOSITOL_PHOSPHATE_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
 
isAcylCoAConjugate(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isAlphaHydroxyFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isAromatic(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isBetaHydroxyFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isBioTransformerValid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isBioTransformerValidStrict(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isBtValid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isC23BileAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isC24BileAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isCompoundInorganic(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isConjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.ECBasedBTransformer
 
isConjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.HGutBTransformer
 
isDeconjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.ECBasedBTransformer
 
isDeconjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.HGutBTransformer
 
isEtherLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isGlutathioneConjugate(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isGlycerol_3_PhosphateInositol(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isGlyceroLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isGlycerophosphoLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isGlycinatedCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isGlycosylatedCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isInvalidPhase2Metabolite(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isInvalidPhaseIISubstrateByExlcusion(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isMetabolizablePolyphenolOrDerivative(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isMixture(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
ISOCYANATE_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVAN_4_OL_DEHYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVANONE_C_RING_FISSION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVANONE_C_RING_FISSION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVANONE_DEHYDRATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVONE_4P_O_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVONE_4P_OH_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVONE_6_C_DEGLYCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVONE_7_OH_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVONE_8_C_DEGLYCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
ISOFLAVONE_REDUCTION_TO_ISOFLAVANONE - biotransformer.transformation.MRPatterns.ReactionName
 
isOligoOrPolysaccharide(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isOmegaHydroxyFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
ISOMERIZATION_OF_ALKYLARENE_OXIDE_TO_PHENOL - biotransformer.transformation.MRPatterns.ReactionName
 
ISOXAZOLE_RING_OPENING - biotransformer.transformation.MRPatterns.ReactionName
Miscellaneous
isPhaseIPolyphenolCandidateOrDerivative(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPolyphenolOrDerivative(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPotentialHumanPhase2SubstrateByReactionPatternMatching(IAtomContainer) - Method in class biotransformer.btransformers.Phase2BTransformer
 
isPotentialNonHumanPhase2SubstrateByReactionPatternMatching(IAtomContainer) - Method in class biotransformer.btransformers.Phase2BTransformer
 
isPotentialPhase2SubstrateByReactionPatternMatching(IAtomContainer) - Method in class biotransformer.btransformers.Phase2BTransformer
 
isPotentialPhaseIISubstrateByReactionPatternMatching(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPotentialSubstrateByReactionPatternMatching(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
 
isPpsCofactor(String) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPpsCofactor(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPpsDeadEndCompound(String) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPpsDeadEndCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isPpsValid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isSaturatedFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isSphingoLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isStandardAminoAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isSulfatedCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isSulfateEster(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isTetrapyrrole(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isUnneccessaryMetabolite(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
 
isUnsaturatedFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isUnsubstitutedSatudatedFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
 
isValid_EC_2_8_2_2_substrate(IAtomContainer, boolean) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
 
isValidCyp450Substrate(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
 
isValidCyp450Substrate(IAtomContainer, Enzyme.EnzymeName, ArrayList<ChemicalClassFinder.ChemicalClassName>) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
 
isValidSubstrate(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.btransformers.Biotransformer
 
isValidSubstrate(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
 
isValidSubstrate(IAtomContainer, Enzyme.EnzymeName, ArrayList<ChemicalClassFinder.ChemicalClassName>) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
 
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