Uses of Class
biotransformer.biosystems.BioSystem.BioSystemName
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Packages that use BioSystem.BioSystemName Package Description biotransformer.biosystems biotransformer.btransformers biotransformer.transformation -
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Uses of BioSystem.BioSystemName in biotransformer.biosystems
Fields in biotransformer.biosystems declared as BioSystem.BioSystemName Modifier and Type Field Description BioSystem.BioSystemName
BioSystem. name
Methods in biotransformer.biosystems that return BioSystem.BioSystemName Modifier and Type Method Description static BioSystem.BioSystemName
BioSystem.BioSystemName. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static BioSystem.BioSystemName[]
BioSystem.BioSystemName. values()
Returns an array containing the constants of this enum type, in the order they are declared.Constructors in biotransformer.biosystems with parameters of type BioSystem.BioSystemName Constructor Description BioSystem(BioSystem.BioSystemName bsName, java.util.ArrayList<Enzyme> enzymes)
BioSystem(BioSystem.BioSystemName bsName, org.codehaus.jackson.map.ObjectMapper mapper)
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Uses of BioSystem.BioSystemName in biotransformer.btransformers
Methods in biotransformer.btransformers that return BioSystem.BioSystemName Modifier and Type Method Description BioSystem.BioSystemName
Biotransformer. getBioSystemName()
Constructors in biotransformer.btransformers with parameters of type BioSystem.BioSystemName Constructor Description Biotransformer(BioSystem.BioSystemName bioSName)
Cyp450BTransformer(BioSystem.BioSystemName bioSName)
Deglycolyzer(BioSystem.BioSystemName bioSName)
ECBasedBTransformer(BioSystem.BioSystemName bioSName)
Phase2BTransformer(BioSystem.BioSystemName bioSName)
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Uses of BioSystem.BioSystemName in biotransformer.transformation
Fields in biotransformer.transformation declared as BioSystem.BioSystemName Modifier and Type Field Description BioSystem.BioSystemName
MReactionsFilter. bioSysName
Methods in biotransformer.transformation that return BioSystem.BioSystemName Modifier and Type Method Description BioSystem.BioSystemName
Biotransformation. getBioSystemName()
Constructors in biotransformer.transformation with parameters of type BioSystem.BioSystemName Constructor Description Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, BioSystem.BioSystemName bsysName)
Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, java.lang.Double score, BioSystem.BioSystemName bsysName)
MReactionsFilter(BioSystem.BioSystemName bioSysName)
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