Package biotransformer.utils
Class Utilities
- java.lang.Object
-
- biotransformer.utils.Utilities
-
public class Utilities extends java.lang.Object
-
-
Constructor Summary
Constructors Constructor Description Utilities()
-
Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static void
annotateAtomContainerWithProps(org.openscience.cdk.interfaces.IAtomContainer molecule, java.util.LinkedHashMap<java.lang.Object,java.lang.Object> props)
static boolean
containsBiotransformation(java.util.ArrayList<Biotransformation> biotransformations, Biotransformation bt)
static org.openscience.cdk.interfaces.IAtomContainerSet
createEmptyAtomContainerSet()
static org.openscience.cdk.interfaces.IAtomContainerSet
getCDKAtomContainerSet()
static void
print(java.util.ArrayList<java.lang.String> aList)
static java.util.ArrayList<java.lang.String>
removeDuplicateStrings(java.util.ArrayList<java.lang.String> listOfStrings)
static java.lang.String
returnFirstCleanSynonym(java.lang.String[] synonyms)
static java.lang.String
returnFirstCleanSynonym(java.util.ArrayList<java.lang.String> synonyms)
static java.util.ArrayList<Biotransformation>
selectUniqueBiotransformations(java.util.ArrayList<Biotransformation> biotransformations)
-
-
-
Method Detail
-
removeDuplicateStrings
public static java.util.ArrayList<java.lang.String> removeDuplicateStrings(java.util.ArrayList<java.lang.String> listOfStrings)
-
print
public static void print(java.util.ArrayList<java.lang.String> aList)
-
getCDKAtomContainerSet
public static org.openscience.cdk.interfaces.IAtomContainerSet getCDKAtomContainerSet()
-
annotateAtomContainerWithProps
public static void annotateAtomContainerWithProps(org.openscience.cdk.interfaces.IAtomContainer molecule, java.util.LinkedHashMap<java.lang.Object,java.lang.Object> props)
-
selectUniqueBiotransformations
public static java.util.ArrayList<Biotransformation> selectUniqueBiotransformations(java.util.ArrayList<Biotransformation> biotransformations)
-
containsBiotransformation
public static boolean containsBiotransformation(java.util.ArrayList<Biotransformation> biotransformations, Biotransformation bt)
-
createEmptyAtomContainerSet
public static org.openscience.cdk.interfaces.IAtomContainerSet createEmptyAtomContainerSet()
-
returnFirstCleanSynonym
public static java.lang.String returnFirstCleanSynonym(java.lang.String[] synonyms)
-
returnFirstCleanSynonym
public static java.lang.String returnFirstCleanSynonym(java.util.ArrayList<java.lang.String> synonyms)
-
-