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M

M_HYDROXYLATION_OF_MONOSUBSTITUTED_BENZENE - biotransformer.transformation.MRPatterns.ReactionName
 
main(String[]) - Static method in class biotransformer.biosystems.BioSystem
 
main(String[]) - Static method in class biotransformer.transformation.MetabolicReaction
 
main(String[]) - Static method in class biotransformer.transformation.MRPatterns
 
main(String[]) - Static method in class biotransformer.utils.BioTransformerDBBuilder
 
main(String[]) - Static method in class biotransformer.utils.ChemicalClassFinder
 
main(String[]) - Static method in class biotransformer.utils.ChemSearcher
 
main(String[]) - Static method in class biotransformer.utils.CompoundDictionary
 
main(String[]) - Static method in class biotransformer.utils.ErdbTask
 
main(String[]) - Static method in class executable.BiotransformerExecutable
 
mapper - Variable in class biotransformer.btransformers.Biotransformer
 
MASS - biotransformer.utils.MetaboliteFinder.FinderOption
 
MASSFORMULA - biotransformer.utils.MetaboliteFinder.FinderOption
 
MEDIUM_CHAIN_ACYL_COA_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
 
MetabolicPathway - Class in biotransformer.transformation
 
MetabolicPathway(MetabolicPathway.MPathwayName, BioSystem) - Constructor for class biotransformer.transformation.MetabolicPathway
 
MetabolicPathway.MPathwayName - Enum in biotransformer.transformation
 
MetabolicReaction - Class in biotransformer.transformation
The first reactantsSMARTS is the main one, for which indices might be retrieved to apply position-specific transformations.
MetabolicReaction(MRPatterns.ReactionName) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetabolicReaction(MRPatterns.ReactionName, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetabolicReaction(MRPatterns.ReactionName, String, String, String, ArrayList<String>, ArrayList<String>, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetabolicReaction(MRPatterns.ReactionName, String, String, ArrayList<String>, ArrayList<String>, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetabolicReaction(MRPatterns.ReactionName, String, ArrayList<String>, ArrayList<String>, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetabolicReaction(String) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetabolicReaction(String, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
 
MetaboliteFinder - Class in biotransformer.utils
 
MetaboliteFinder() - Constructor for class biotransformer.utils.MetaboliteFinder
 
MetaboliteFinder.FinderOption - Enum in biotransformer.utils
 
metabolizeWithEnzyme(IAtomContainer, Enzyme.EnzymeName, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzyme(IAtomContainer, Enzyme, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzyme(IAtomContainer, Enzyme, boolean, boolean, int, double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzyme(IAtomContainerSet, Enzyme, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzymes(IAtomContainer, ArrayList<Enzyme>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzymes(IAtomContainerSet, ArrayList<Enzyme>, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzymesBreadthFirst(IAtomContainer, ArrayList<Enzyme>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzymesBreadthFirst(IAtomContainerSet, ArrayList<Enzyme>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
 
metabolizeWithEnzymesDephtFirst(IAtomContainer, ArrayList<Enzyme>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
 
METHYLARSONITE_O_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
METHYLENE_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
METHYLENEDIOXY_RING_OPENING - biotransformer.transformation.MRPatterns.ReactionName
 
MICROBIAL_POLYPHENOL_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
 
MONOLYSOCARDIOLIPIN_ACYLATION - biotransformer.transformation.MRPatterns.ReactionName
 
MReactionSets - Class in biotransformer.transformation
 
MReactionSets() - Constructor for class biotransformer.transformation.MReactionSets
 
MReactionsFilter - Class in biotransformer.transformation
 
MReactionsFilter() - Constructor for class biotransformer.transformation.MReactionsFilter
 
MReactionsFilter(BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.MReactionsFilter
 
mrFilter - Variable in class biotransformer.biosystems.BioSystem
 
MRPatterns - Class in biotransformer.transformation
 
MRPatterns() - Constructor for class biotransformer.transformation.MRPatterns
 
MRPatterns.ReactionName - Enum in biotransformer.transformation
 
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