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B
- B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
- B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
- BACTERIAL_BILE_SALT_12_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
- BACTERIAL_BILE_SALT_3_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
- BACTERIAL_BILE_SALT_7_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
- BACTERIAL_LACTONASE - biotransformer.biomolecule.Enzyme.EnzymeName
- BACTERIAL_NITROREDUCTASE - biotransformer.biomolecule.Enzyme.EnzymeName
- BENZALDEHYDE_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
- BENZOIC_ACID_DECARBOXYLATION - biotransformer.transformation.MRPatterns.ReactionName
- BETA_D_GALACTOSIDE_6_ACETYLATION - biotransformer.transformation.MRPatterns.ReactionName
- BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
- BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
- BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
- BETA_D_GALACTOSYL_BETA_D_GLUCOSYL_CERAMIDE_ACETYLGALACTOSAMINE_TRANSFER - biotransformer.transformation.MRPatterns.ReactionName
- BETA_D_GLUCORONOSIDE_GLUCURONOSOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- BETA_GLUCORONOSIDE_GLUCURONOSOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
- BETA_HYDROXYLATED_FATTY_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
- BETA_OXIDATION_OF_CARBXOYLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
- BILE_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
- BILE_ACID_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
- BIOSYNTHESIS_OF_AMINO_ACIDS - biotransformer.transformation.MetabolicPathway.MPathwayName
- BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS - biotransformer.transformation.MetabolicPathway.MPathwayName
- bioSysName - Variable in class biotransformer.transformation.MReactionsFilter
- BioSystem - Class in biotransformer.biosystems
- BioSystem(BioSystem.BioSystemName, ArrayList<Enzyme>) - Constructor for class biotransformer.biosystems.BioSystem
- BioSystem(BioSystem.BioSystemName, ObjectMapper) - Constructor for class biotransformer.biosystems.BioSystem
- BioSystem.BioSystemName - Enum in biotransformer.biosystems
- Biotransformation - Class in biotransformer.transformation
- Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, Enzyme.EnzymeName, IAtomContainerSet) - Constructor for class biotransformer.transformation.Biotransformation
- Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, ArrayList<Enzyme.EnzymeName>, IAtomContainerSet, BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.Biotransformation
- Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, ArrayList<Enzyme.EnzymeName>, IAtomContainerSet, Double, BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.Biotransformation
- Biotransformer - Class in biotransformer.btransformers
- Biotransformer(BioSystem.BioSystemName) - Constructor for class biotransformer.btransformers.Biotransformer
- biotransformer.biomolecule - package biotransformer.biomolecule
-
This class implements the class of metabolic enzymes.
- biotransformer.biosystems - package biotransformer.biosystems
- biotransformer.btransformers - package biotransformer.btransformers
- biotransformer.esaprediction - package biotransformer.esaprediction
- biotransformer.fingerprint - package biotransformer.fingerprint
- biotransformer.transformation - package biotransformer.transformation
- biotransformer.utils - package biotransformer.utils
- biotransformer.version - package biotransformer.version
- BioTransformerDBBuilder - Class in biotransformer.utils
- BioTransformerDBBuilder() - Constructor for class biotransformer.utils.BioTransformerDBBuilder
- BiotransformerExecutable - Class in executable
- BiotransformerExecutable() - Constructor for class executable.BiotransformerExecutable
- BISALLYLIC_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
- bSystem - Variable in class biotransformer.btransformers.Biotransformer
- btPriorityHash - Variable in class biotransformer.transformation.MReactionsFilter
- buildBiotransformationList(String, String) - Method in class biotransformer.utils.BioTransformerDBBuilder
- buildCYP450ReactionLibrary(String) - Method in class biotransformer.utils.BioTransformerDBBuilder
- buildCYPspecificitySDFFileFromDB(String, String) - Method in class biotransformer.utils.BioTransformerDBBuilder
- buildSdfFromTSV(String) - Static method in class biotransformer.utils.FileUtilities
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