Uses of Class
biotransformer.biomolecule.Enzyme.EnzymeName
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Packages that use Enzyme.EnzymeName Package Description biotransformer.biomolecule This class implements the class of metabolic enzymes.biotransformer.biosystems biotransformer.btransformers biotransformer.esaprediction biotransformer.transformation -
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Uses of Enzyme.EnzymeName in biotransformer.biomolecule
Methods in biotransformer.biomolecule that return Enzyme.EnzymeName Modifier and Type Method Description static Enzyme.EnzymeName
Enzyme.EnzymeName. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static Enzyme.EnzymeName[]
Enzyme.EnzymeName. values()
Returns an array containing the constants of this enum type, in the order they are declared.Constructors in biotransformer.biomolecule with parameters of type Enzyme.EnzymeName Constructor Description Enzyme(Enzyme.EnzymeName enzName)
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Uses of Enzyme.EnzymeName in biotransformer.biosystems
Methods in biotransformer.biosystems that return types with arguments of type Enzyme.EnzymeName Modifier and Type Method Description java.util.LinkedHashMap<Enzyme.EnzymeName,Enzyme>
BioSystem. getEnzymeHash()
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Uses of Enzyme.EnzymeName in biotransformer.btransformers
Methods in biotransformer.btransformers with parameters of type Enzyme.EnzymeName Modifier and Type Method Description boolean
Biotransformer. isValidSubstrate(org.openscience.cdk.interfaces.IAtomContainer target, Enzyme.EnzymeName enzymeName)
java.util.ArrayList<Biotransformation>
Biotransformer. metabolizeWithEnzyme(org.openscience.cdk.interfaces.IAtomContainer substrate, Enzyme.EnzymeName enz, boolean preprocess, boolean filter, double threshold)
Method parameters in biotransformer.btransformers with type arguments of type Enzyme.EnzymeName Modifier and Type Method Description java.util.ArrayList<Biotransformation>
Cyp450BTransformer. predictCyp450BiotransformationsForSpecificEnzymes(org.openscience.cdk.interfaces.IAtomContainer substrate, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, boolean preprocess, boolean filter, double threshold)
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Uses of Enzyme.EnzymeName in biotransformer.esaprediction
Methods in biotransformer.esaprediction with parameters of type Enzyme.EnzymeName Modifier and Type Method Description boolean
ESSpecificityPredictor. isPotentialSubstrateByReactionPatternMatching(org.openscience.cdk.interfaces.IAtomContainer substrate, Enzyme.EnzymeName enz)
boolean
ESSpecificityPredictor. isValidCyp450Substrate(org.openscience.cdk.interfaces.IAtomContainer substrate, Enzyme.EnzymeName enz)
boolean
ESSpecificityPredictor. isValidCyp450Substrate(org.openscience.cdk.interfaces.IAtomContainer substrate, Enzyme.EnzymeName enz, java.util.ArrayList<ChemicalClassFinder.ChemicalClassName> chemClasses)
boolean
ESSpecificityPredictor. isValidSubstrate(org.openscience.cdk.interfaces.IAtomContainer substrate, Enzyme.EnzymeName enz)
boolean
ESSpecificityPredictor. isValidSubstrate(org.openscience.cdk.interfaces.IAtomContainer substrate, Enzyme.EnzymeName enz, java.util.ArrayList<ChemicalClassFinder.ChemicalClassName> chemClasses)
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Uses of Enzyme.EnzymeName in biotransformer.transformation
Methods in biotransformer.transformation that return types with arguments of type Enzyme.EnzymeName Modifier and Type Method Description java.util.ArrayList<Enzyme.EnzymeName>
Biotransformation. getEnzymeNames()
Method parameters in biotransformer.transformation with type arguments of type Enzyme.EnzymeName Modifier and Type Method Description void
Biotransformation. setEnzymeNames(java.util.ArrayList<Enzyme.EnzymeName> elsit)
Constructors in biotransformer.transformation with parameters of type Enzyme.EnzymeName Constructor Description Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, Enzyme.EnzymeName enzymeName, org.openscience.cdk.interfaces.IAtomContainerSet products)
Constructor parameters in biotransformer.transformation with type arguments of type Enzyme.EnzymeName Constructor Description Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, BioSystem.BioSystemName bsysName)
Biotransformation(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, java.lang.Double score, BioSystem.BioSystemName bsysName)
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