Uses of Class
biotransformer.transformation.MetabolicPathway.MPathwayName
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Packages that use MetabolicPathway.MPathwayName Package Description biotransformer.biosystems biotransformer.btransformers biotransformer.transformation biotransformer.utils -
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Uses of MetabolicPathway.MPathwayName in biotransformer.biosystems
Methods in biotransformer.biosystems that return types with arguments of type MetabolicPathway.MPathwayName Modifier and Type Method Description java.util.LinkedHashMap<MetabolicPathway.MPathwayName,java.util.ArrayList<Enzyme>>
BioSystem. getMetPathwaysHash()
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Uses of MetabolicPathway.MPathwayName in biotransformer.btransformers
Methods in biotransformer.btransformers with parameters of type MetabolicPathway.MPathwayName Modifier and Type Method Description java.util.ArrayList<Biotransformation>
Biotransformer. applyPathwaySpecificBiotransformationChain(org.openscience.cdk.interfaces.IAtomContainer target, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, int nr_of_steps)
java.util.ArrayList<Biotransformation>
Biotransformer. applyPathwaySpecificBiotransformations(org.openscience.cdk.interfaces.IAtomContainer target, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, java.lang.Double scoreThreshold)
Predicts the metabolism of a compound for a specific pathway, and returns metabolites with a minimal given score threshold.java.util.ArrayList<Biotransformation>
Biotransformer. applyPathwaySpecificBiotransformations(org.openscience.cdk.interfaces.IAtomContainerSet targets, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, java.lang.Double scoreThreshold)
Predicts the metabolism of a compound for a specific pathway, and returns metabolites with a minimal given score threshold.java.util.ArrayList<Biotransformation>
Biotransformer. applyPathwaySpecificBiotransformationsChain(org.openscience.cdk.interfaces.IAtomContainer target, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, int nr_of_steps, java.lang.Double scoreThreshold)
java.util.ArrayList<Biotransformation>
Biotransformer. applyPathwaySpecificBiotransformationsChain(org.openscience.cdk.interfaces.IAtomContainerSet targets, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, int nr_of_steps, java.lang.Double scoreThreshold)
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Uses of MetabolicPathway.MPathwayName in biotransformer.transformation
Methods in biotransformer.transformation that return MetabolicPathway.MPathwayName Modifier and Type Method Description static MetabolicPathway.MPathwayName
MetabolicPathway.MPathwayName. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static MetabolicPathway.MPathwayName[]
MetabolicPathway.MPathwayName. values()
Returns an array containing the constants of this enum type, in the order they are declared.Constructors in biotransformer.transformation with parameters of type MetabolicPathway.MPathwayName Constructor Description MetabolicPathway(MetabolicPathway.MPathwayName pathwayName, BioSystem bsys)
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Uses of MetabolicPathway.MPathwayName in biotransformer.utils
Methods in biotransformer.utils with parameters of type MetabolicPathway.MPathwayName Modifier and Type Method Description java.util.ArrayList<Biotransformation>
HumanSuperBioTransformer. applyPathwaySpecificBiotransformations(org.openscience.cdk.interfaces.IAtomContainer molecule, MetabolicPathway.MPathwayName pathway, boolean preprocess, boolean filter, double scoreThreshold)
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