A Package for Demultiplexing Cell Hashing Data


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Documentation for package ‘cellhashR’ version 1.0.3

Help Pages

AppendCellHashing Append Cell Hashing to a Seurat Object
CalculateSaturationFor10x Calculate Saturation For 10x
CallAndGenerateReport Call Cell Hashing And Generate Report
EstimateMultipletRate Estimate Multiplet Rate for 10x Genomics Data
GenerateCellHashingCalls Generate Cell Hashing Calls
GetExampleMarkdown Get Example Markdown
GetSeed Get random seed
ParameterScan Perform a parameter scan with BFF parameters
PlotLibrarySaturation Plot Library Saturation
PlotLibrarySaturationByMarker Plot Library Saturation By Marker
PlotNormalizationQC Plot Normalization QC
ProcessCountMatrix Process CiteSeq Count Matrix
SetSeed Set random seed
SummarizeCellsByClassification Summarize Cells By Classification