[console_scripts]
bactopia-atb-downloader=bactopia.cli.atb.atb_downloader:main
bactopia-atb-formatter=bactopia.cli.atb.atb_formatter:main
bactopia-bracken-to-excel=bactopia.cli.pipeline.bracken_to_excel:main
bactopia-catalog=bactopia.cli.catalog:main
bactopia-check-assembly-accession=bactopia.cli.pipeline.check_assembly_accession:main
bactopia-check-fastqs=bactopia.cli.pipeline.check_fastqs:main
bactopia-citations=bactopia.cli.citations:main
bactopia-cleanup-coverage=bactopia.cli.pipeline.cleanup_coverage:main
bactopia-datasets=bactopia.cli.datasets:main
bactopia-docs=bactopia.cli.docs:main
bactopia-download=bactopia.cli.download:main
bactopia-kraken-bracken-summary=bactopia.cli.pipeline.kraken_bracken_summary:main
bactopia-lint=bactopia.cli.lint:main
bactopia-mask-consensus=bactopia.cli.pipeline.mask_consensus:main
bactopia-merge-schemas=bactopia.cli.helpers.merge_schemas:main
bactopia-prepare=bactopia.cli.prepare:main
bactopia-prune=bactopia.cli.prune:main
bactopia-pubmlst-build=bactopia.cli.pubmlst.build:main
bactopia-pubmlst-setup=bactopia.cli.pubmlst.setup:main
bactopia-review-tests=bactopia.cli.review:main
bactopia-scaffold=bactopia.cli.scaffold:main
bactopia-scrubber-summary=bactopia.cli.pipeline.scrubber_summary:main
bactopia-search=bactopia.cli.search:main
bactopia-status=bactopia.cli.status:main
bactopia-summary=bactopia.cli.summary:main
bactopia-sysinfo=bactopia.cli.sysinfo:main
bactopia-test=bactopia.cli.testing:main
bactopia-teton-prepare=bactopia.cli.pipeline.teton_prepare:main
bactopia-update=bactopia.cli.update:main
bactopia-workflows=bactopia.cli.workflows:main

