**/*.{err,gz,html,log,pdf,stderr,stdout}
**/nf.command.*
bactopia-runs/**/nf-reports/*.{dot,html}

**/*.{bam,bai,bionj,contree,iqtree,mldist,nex,phylip,tre,treefile,txt,ufboot}
**/*.per_branch_statistics.csv
**/core-snp.masked.distance.tsv
